SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14440

Length: 548 nt

Origin of reads: Biogeco2 v2 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene14440
CGTCGTGACCTTGGCTGTCACTCAAGAATTACGCCGGATCTTGGTCACCCGACCAGGATCGAATCCCGGCGGCTTTACGGTGGAGGAGACGAACCAGATGCAGTACTTGCACGCTGCGCTCTCCGAAACGTTAAGGCTCTATCCCCCGCTCCCTATAAACTATAAGGAAGTGATAGAGGATGAGGTGTTGCCGGACGGGGCACGGTTGAAAAGGGGAACAAATCTCATATTCCCGATATATTCCATGGGGAGGACGGAGAGCATATGGGGAGCAGACTGCAGTGAGTTTAAGCCGGAGAGATGGCTGAAAGAAGGTGTGTTCGTGCCGGAAGGGAGCTGTAAATACCCAGTGTTCAATGCAGGCCCCAGAGTTTGCCTTGGCAAGGATTTTGCTCTTTTGCTCATGAAATGGGTGGCGGCATCTCTGATTTACAGATATCGTCTGAAAATGGCAAAGGATGTGATGGTTGAGCCAAAGTTGGGAATTACCCTGTGTCTGAAGAACGGCCTAGTAGTGACCCTGCAACCGCGATCAGAAATATTGAAGA

Ace file of the UniGene sp_v2.0_unigene14440

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cytochrome P450 [Brassica rapa subsp. pekinensis]	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	cytochrome p450	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	0.0	73%
Blast2go	iron ion binding	GO:0005506	Molecular Function	0.0	73%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cytochrome P450, B-class	IPR002397	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLC1

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 182 - 528

Fln protein: VVTLAVTQELRRILVTRPGSNPGGFTVEETNQMQYLHAALSETLRLYPPLPINYKEVIEDEVLPDGARLKRGTNLIFPIYSMGRTESIWGADCSEFKPERWLKEGVFVPEGSCKYPVFNAGPRVCLGKDFALLLMKWVAASLIYRYRLKMAKDVMVEPKLGITLCLKNGLVVTLQPRSEILK

Protein Length: 183

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGAATTACGCCGGATCTTGGTCACCCGACCAGGATCGAATCCCGGCGGCTTTACGGTGGAGGAGACGAACCAGATGCAGTACTTGCACGCTGCGCTCTCCGAAACGTTAAGGCTCTATCCCCCGCTCCCTATAAACTATAAGGAAGTGATAGAGGATGAGGTGTTGCCGGACGGGGCACGGTTGAAAAGGGGAACAAATCTCATATTCCCGATATATTCCATGGGGAGGACGGAGAGCATATGGGGAGCAGACTGCAGTGAGTTTAAGCCGGAGAGATGGCTGAAAGAAGGTGTGTTCGTGCCGGAAGGGAGCTGTAAATACCCAGTGTTCAATGCAGGCCCCAGAGTTTGCCTTGGCAAGGATTTTGCTCTTTTGCTCATGAAATGGGTGGCGGCATCTCTGATTTACAGATATCGTCTGAAAATGGCAAAGGATGTGATGGTTGAGCCAAAGTTGGGAATTACCCTGTGTCTGAAGAACGGCCTAGTAGTGACCCTGCAACCGCGATCAGAAATATTGAAGA

Fln Alignment:

Contig14440___VTQELRRILVTRP-----GSNPGGFTVEETNQMQYLHAALSETLRLYPPLPINYKEVIEDEVLPDGARLKRGTNLIFPIYSMGRTESIWGADCSEFKPERWLKEGVFVPEGSCKYPVFNAGPRVCLGKDFALLLMKWVAASLIYRYRLKMAKDV-MVEPKLGITLCLKNGLVVTLQPR
B8LLC1_______________IMEEIYSILEARPNQKQEGNDPVCFSKDELKQMHYLHACLSEAIRLYPPLPLDRKQVSENVVLPDGTPIKKGTVIFYIIYAMGRMESIWGNDCMEFKPERWLNKGVFLSHPAPKFAVFNGGPRLCLGKDFAYLQMKYLAASVLYCFKVRAADSIESVESKLGVTLYMKGGFRVTLHAR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain