SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14364

Length: 1725 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene14364

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mlf1IP domain containing protein	-	-	2.0e-07	22%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	protein	-	-	4.70173e-34	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1E6

Fln msg: your sequence is longer than subject: 334 - 207

Fln protein: MQGGRRNGDMSMFSDPFGSMSGSSVFSSFFDRDPFDDPFFRRPFGSAFGSGSIFGAEGFFGKHNVFLDEREYQEPQSVRRGPVIEELPDDHEEGRHESSQEPIVEDPDDEQVNTGQRTQRQRQRGNQSVFQGSNNTFPRQSSSQTFSFQSSKVTYGGQNGAYYTSSTTRRMGPDGVTHEEHMEADTTTGNATKRISRGIKDKGHSITKKLNSDGRVETKEILHNMDGDEIDQFDNEWKKKQMKLCLGGKNPTHKCSRQEEVVRVMFRVSVDSLGFHLPPVNRTNNLKRLSVCRYLTAKERTNGLTGIRKRTNNLIRKTRLADGLDFERINMSN*

Protein Length: 335

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAGATAGTAGAAGCGTCGGACGTTGGCTTCACTTTAATTTTACCTTATCACGGAAGCAATCCGTTAATTCGGGGGCCTTCCCAGCTCTTTCCAGAACGTTCGCTGATGAAGCAGAAATTCAACGTTACCAGTTCTTATAATTACCCTGTCAAGCGAGAGCATCCATTGACAGGCGTCGCTGTAACTGATTGTCTTGATTGAAAGCAGGTTTTTGAATTTTCTTTGAAAGGAGAGGGGAAGAACCTGAAAAG_-_ATGCAGGGAGGCCGCAGGAATGGAGATATGTCTATGTTTTCGGACCCATTTGGGTCCATGAGCGGGAGCAGTGTTTTCTCGAGCTTCTTCGACCGCGACCCTTTCGATGATCCATTTTTCAGGAGGCCATTTGGAAGTGCTTTTGGGTCGGGTAGTATTTTTGGGGCGGAAGGATTCTTTGGCAAACATAATGTTTTCCTTGATGAACGGGAGTATCAGGAGCCGCAGTCTGTTCGAAGGGGTCCCGTGATTGAAGAGCTGCCAGATGATCATGAGGAGGGGCGTCACGAGTCGAGTCAGGAACCCATTGTTGAAGATCCAGATGATGAACAAGTTAACACAGGACAGAGAACGCAGAGGCAGAGGCAGAGGGGGAACCAGAGTGTATTCCAGGGAAGTAACAATACTTTTCCAAGGCAGTCATCGTCTCAAACCTTCTCATTCCAAAGTTCCAAAGTAACATACGGAGGACAGAACGGCGCATATTATACATCCTCAACAACCAGGAGAATGGGCCCTGATGGGGTGACTCACGAGGAACACATGGAAGCGGATACCACAACGGGCAACGCAACCAAAAGGATATCCAGAGGAATTAAAGATAAGGGCCATTCTATTACTAAAAAACTGAATTCGGATGGAAGGGTTGAGACGAAGGAAATATTACATAACATGGATGGAGATGAGATCGACCAGTTTGACAACGAGTGGAAAAAAAAGCAGATGAAGCTCTGCCTGGGTGGAAAGAATCCCACGCACAAATGCTCGAGACAGGAAGAAGTGGTACGAGTAATGTTCCGAGTAAGCGTGGACTCCTTGGGCTTTCATCTACCACCAGTAAACAGGACAAACAATCTCAAGAGGCTCTCGGTGTGCCGTTATCTAACAGCAAAAGAGAGGACAAACGGTCTCACAGGGATAAGAAAGAGAACAAACAATCTCATACGGAAAACTCGTCTCGCAGATGGTTTGGACTTCGAAAGGATTAACATGAGCAATTGA___TCTGCTTCTACTGTGTTCATTAGGTTTCTACTGTGTTCATTAGGCAATGACATCTTTATTTGGTCATTTCTGTGGCAGTATAATTTTAACTTTCTCAAACTGGTGGATGAGGAAATCCCATCTacCACTCAACAGATGGGTTTGACGAGGGGtTTGTTTTTCAATTGTTCCCATCTTTCACTAAACAGATGGGTTTGAgGAGGGGATTGTTTTCCAaTTGTTTTTGGTCAGATCCACTTTAACATACAAAGAATGAAGTTAGTTAACATCTAACCCCAAAATAAGTGTTGTATCGATTGTTTCGGAAAATCCCCTGCATTTGCAGATGGATAGGCAATGGCATTTAGCATCTTCACGGGTTTTCTGTTCTGTTCCAAAGTTTAGGAATATTCTTTTCATGATGCGGGCCTTTTTATTTGTTTACAATATATAAATCCAGTGATGGTT

Fln Alignment:

Contig14364___MQGGRRNGDMSMFSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHNVFLDEREYQEPQSVRRGPVIEELPDDHEEGRHESSQEPIVEDPDDEQVXXXXXXXXXXXXXXXSVFQGSNNTFPRXXXXXXXXXXXXKVTYGGQNGAYYTSSTT
A9P1E6_______________MQGGRRNGDMSFFSDPFGSKSGRNVFSSFFDRDPFDDPFFTRPFGSASILGPEGFFG----RQNGFIDDQEYEVPQSVRRGPVIEELPDDNEDGRNESSQEPIVEDPDDDQ--GNTEQRTQRQRGNQSVYQGTNNSYPRQSSSQTFSFQSSKVTYGGQNGAYYTSSTT

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
196			25	75	0.996473
197		60	40		1.0
377		85		14	0.999981
403		35	64		1.0
523			88	11	0.923564
527		44		55	1.0
865		20		80	0.995493
1098	9			90	0.999842
1396	66		33		0.997452
1397	33		33		0.997753
1400		66		33	0.997452
1402		66	33		0.997452
1403	66	33			0.997452
1407	33			66	0.997452
1408	33			66	0.997452
1550	75		25		0.996473
1562	75		25		0.996473
1631	33		66		0.997452
1645		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
630	648	GCAGAG GCAGAG GCAGAG G	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain