SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14278

Length: 783 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene14278

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cys2/His2 zinc-finger transcription factor [Silene latifolia]	-	-	5.0e-18	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	epf-type cis2-his2 zinc finger transcription factor	-	-	9.3796e-24	51%

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
221			33	66	0.997452
222	66			33	0.997452
224		66	33		0.997452
229	66	33			0.997452
230	66	33			0.997452
233			33	66	0.997452
237	66		33		0.997452
238		66		33	0.997452
239	66	33			0.997452
275		66		33	0.997452
307		33	66		0.997452
327	33		66		0.997452
472	33		66		0.997452
514			60	40	1.0
535		60		40	1.0
579			33	66	0.997452
595	66	33			0.997452
603	66		33		0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
24	35	ATG ATG ATG ATG	12
475	487	GCA GCA GCA GCA G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain