SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14250

Length: 857 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene14250 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	1-phosphatidylinositol-3-phosphate 5-kinase [Arabidopsis thaliana] dbj\|BAE99133.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE86194.1\| 1-phosphatidylinositol-3-phosphate 5-kinase [Arabidopsis thaliana]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	1-phosphatidylinositol-3-phosphate 5-kinase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.7.1.15-	-	0.0	83%
Blast2go	1-phosphatidylinositol-4-phosphate 5-kinase.	EC:2.7.1.68	-	0.0	83%

Source	KEGGs	Term	Identity
Blast2go	Inositol phosphate metabolism	00562	83%
Blast2go	Metabolic pathways	01100	83%
Blast2go	Phosphatidylinositol signaling system	04070	83%

Source	GOs	Term	Type	Identity
Blast2go	cellular protein metabolic process	GO:0044267	Biological Process	83%
Blast2go	endomembrane system organization	GO:0010256	Biological Process	83%
Blast2go	pollen development	GO:0009555	Biological Process	83%
Blast2go	phosphatidylinositol phosphorylation	GO:0046854	Biological Process	83%
Blast2go	vacuole organization	GO:0007033	Biological Process	83%
Blast2go	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	83%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	83%
Blast2go	1-phosphatidylinositol-3-phosphate 5-kinase activity	GO:0000285	Molecular Function	83%
Blast2go	1-phosphatidylinositol-4-phosphate 5-kinase activity	GO:0016308	Molecular Function	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	endosome	GO:0005768	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	Serine hydroxymethyltransferase	IPR001085	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-
Sma3	Phosphatidylinositol-4-phosphate 5-kinase, core	IPR002498	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	T %	Probability
706	87	12		0.992554
707	87	12		0.992554
716	14	85		0.993533
749	83	16		0.994512
750	83	16		0.994512
751		16	83	0.994512
753	83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain