SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14158

Length: 573 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene14158
GATAGCCACAGATTGGCTATCTTCTGTTTTAGATTCTGGTTTACTTGAAGAAGGCATCATGAAGTCACTTCAAGGTTTAATCAGCCTGCGTCCACATACTCCAAATTCAAGACAGCAGCGTGTATTTGCACAAAGGTGGAAAAATTTACAAACAGACAATATGGTTAACGCCTCCTTGAATGCATTTGGACTATATGCTTATGACAGTATATTGATGATTGCTCACTCTCTCAACACCTACTTCAAACAAGGAGGAAATATCTCTTTTGCAGAACCATCTTCTCTATCAAGTCAGAGCGGAGGCAAATCAGAACTAGCAGAACTGAAGGTCTTTGAAGGAGGAGCACAGTTACAAAAGATAATATTACAAACTAATTTCAACGGCATTGCAGGTCCTGTACTCTTGGACAAAAATGGGAACTTGATGAGCTCTGCATTTGAGATTATCAATGTAGTTGGTAAAGGCTTCCGCAGCATTGGTTTCTGGTCAAACCAAACTGGTTTATCAGTTACCCCTCCAGAATATACAGCTACCATCAGTAATAATGAATCTCATATAAATCTAACAGTCTC

Ace file of the UniGene sp_v2.0_unigene14158

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutamate receptor n=1 Tax=Populus trichocarpa RepID=B9H685_POPTR	-	-	1.0e-39	44%
FL-Next	sp=Glutamate receptor 3.1; Oryza sativa subsp. japonica (Rice).	-	-	0.0	42%
Blast2go	glutamate-gated kainate-type ion channel receptor subunit 5	-	-	5.60519e-45	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	transport	GO:0006810	Biological Process	5.60519e-45	64%
Blast2go	cellular process	GO:0009987	Biological Process	5.60519e-45	64%
Blast2go	transmembrane signaling receptor activity	GO:0004888	Molecular Function	5.60519e-45	64%
Blast2go	transporter activity	GO:0005215	Molecular Function	5.60519e-45	64%
Blast2go	membrane	GO:0016020	Cellular Component	5.60519e-45	64%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, family 3	IPR000337	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Extracellular solute-binding protein, family 3	IPR001638	-	-
Sma3	Extracellular ligand-binding receptor	IPR001828	-	-
Sma3	GPCR, family 3, gamma-aminobutyric acid receptor, type B	IPR002455	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3		IPR015683	-	-
Sma3	Ionotropic glutamate receptor, plant	IPR017103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7XP59

Fln msg: Distance to subject end: 493 aas, your sequence is shorter than subject: 190 - 938

Fln protein: IATDWLSSVLDSGLLEEGIMKSLQGLISLRPHTPNSRQQRVFAQRWKNLQTDNMVNASLNAFGLYAYDSILMIAHSLNTYFKQGGNISFAEPSSLSSQSGGKSELAELKVFEGGAQLQKIILQTNFNGIAGPVLLDKNGNLMSSAFEIINVVGKGFRSIGFWSNQTGLSVTPPEYTATISNNESHINLTV

Protein Length: 191

Fln nts: GATAGCCACAGATTGGCTATCTTCTGTTTTAGATTCTGGTTTACTTGAAGAAGGCATCATGAAGTCACTTCAAGGTTTAATCAGCCTGCGTCCACATACTCCAAATTCAAGACAGCAGCGTGTATTTGCACAAAGGTGGAAAAATTTACAAACAGACAATATGGTTAACGCCTCCTTGAATGCATTTGGACTATATGCTTATGACAGTATATTGATGATTGCTCACTCTCTCAACACCTACTTCAAACAAGGAGGAAATATCTCTTTTGCAGAACCATCTTCTCTATCAAGTCAGAGCGGAGGCAAATCAGAACTAGCAGAACTGAAGGTCTTTGAAGGAGGAGCACAGTTACAAAAGATAATATTACAAACTAATTTCAACGGCATTGCAGGTCCTGTACTCTTGGACAAAAATGGGAACTTGATGAGCTCTGCATTTGAGATTATCAATGTAGTTGGTAAAGGCTTCCGCAGCATTGGTTTCTGGTCAAACCAAACTGGTTTATCAGTTACCCCTCCAGAATATACAGCTACCATCAGTAATAATGAATCTCATATAAATCTAACAGTCTC

Fln Alignment:

Contig14158___IATDWLSSVLDSGL-LEEGIMKSLQGLISLRPHTPNSRQQRVFAQRWKNLQTDNMVNAS--LNAFGLYAYDSILMIAHSLNTYFKQGGNISFAEPXXXXXXXXXXXELAELKVFEGGAQLQKIILQTNFNGIAGPVLLDKNGNLMSSAFEIINVVGKGFRSIGFWSNQTGLSVTPPE
Q7XP59_______________IATDWLTSYLDPSVHLDIGLLSTMQGVLTLRHHTENTRRKSMLSSKWSELLKEDSGHSRFLLSTYGLYAYDTVWMLAHALDAFFNSGGNISFSPDPKLNEISGRGLNLEALSVFDGGQLLLEKIHQVDFLGATGPVKFDSGGNLIQPAYDIVSIIGSGLRTVGYWSNYSGLSVISPE

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
102		85	14		0.993533
103	85			14	0.993533
104	85		14		0.993533
107		14		85	0.993533
109	85			14	0.993533
110	85			14	0.993533
112	85		14		0.993533
114	85			14	0.993533
118			85	14	0.993533
120	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain