SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14136

Length: 336 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene14136
AACAATCGCTATTCAAGAATACGAAGAAGCAAGTCTACAGCCGCATCTATCGAAAATGGTTAACGTTCCAAAACAGAGAAGAACCTTCTGCAAAGGTCGATCATGCAAGAAGCACACCCTGCACAAGGTCACGCAGTACAAGAAGGGAAGAGACTCCGTCTTCGCGCAAGGAAAGAGGAGATACGATCGTAAGCAGAAGGGCTTCGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGGCCAAGACGACCAAGAAGATCGTGCTCAGGATGGAGTGCACCAGCTGCAAGTTCAAGAAGCAGATTGCGCTCAAGCGATGCAAGCACTTCGAGCTCGG

Ace file of the UniGene sp_v2.0_unigene14136 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein rpl36a n=1 Tax=Arenicola marina RepID=A8UFM0_AREMA	-	-	9.94922e-44	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	60s ribosomal protein l44	-	-	0.0	93%

Source	GOs	Term	Type	Identity
Blast2go	response to cycloheximide	GO:0046898	Biological Process	93%
Blast2go	translation	GO:0006412	Biological Process	93%
Blast2go	response to antibiotic	GO:0046677	Biological Process	93%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	93%
Blast2go	ribosome	GO:0005840	Cellular Component	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L44e	IPR000552	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ93

Fln msg: STOP codon was not found. Distance to subject end: 11 aas,

Fln protein: MVNVPKQRRTFCKGRSCKKHTLHKVTQYKKGRDSVFAQGKRRYDRKQKGFGGQTKPVFHKKAKTTKKIVLRMECTSCKFKKQIALKRCKHFEL

Protein Length: 94

Fln nts: AACAATCGCTATTCAAGAATACGAAGAAGCAAGTCTACAGCCGCATCTATCGAAA_-_ATGGTTAACGTTCCAAAACAGAGAAGAACCTTCTGCAAAGGTCGATCATGCAAGAAGCACACCCTGCACAAGGTCACGCAGTACAAGAAGGGAAGAGACTCCGTCTTCGCGCAAGGAAAGAGGAGATACGATCGTAAGCAGAAGGGCTTCGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGGCCAAGACGACCAAGAAGATCGTGCTCAGGATGGAGTGCACCAGCTGCAAGTTCAAGAAGCAGATTGCGCTCAAGCGATGCAAGCACTTCGAGCTCGG

Fln Alignment:

Contig14136___MVNVPKQRRTFCKGRSCKKHTLHKVTQYKKGRDSVFAQGKRRYDRKQKGFGGQTKPVFHKKAKTTKKIVLRMECTSCKFKKQIALKRCKHFEL
A9NQ93_______________MVNVPKTKKTFCKNKACKKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLKLQCQSCKHYSQHAIKRCKHFEI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain