SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14119

Length: 3487 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene14119
ATGGGGAAGACAACGTCACGTGGCAGAGCCGAGTCAGTTGCATGACCTTGTACAGGACCCTGCATCACCGTTGATAACAATGACAGCCTGCGAAAGCGGAATCACTTTCTAGGCCAATATTTCCGGCCGATTTCTGGTAGCAGTGGGGAAATTTCCGATGGACCTGAAAGTTCAGAGTGCAATCTCAGTCGCCACTTTTAGGTCGGTCGTGACTTTGGCTGTCATTCCATTTTGCGGAAGCTGCAGACTTGGGAGGAGCGAAATGAAATACTTCTGACGTCTTTATTTATTTACCTGAAACTCCGGCCTTGGCTTTAACTAGGTAGATTTTGGGGGCGGGGTTGGATTAGCAGTAGCGATGAATTCATCCTCGTCTTCATCTTCGGTGAAGGATGCCTCTGTCCTGCAGCTGGCCATGGCGGCCTTGCTGGGGGCCTCCGTGATGGCTGTCTCTGCCTTTTACATTCACAAACGGAGCGTTGATCAGGTCCTCAAACAGACTCTGAACTCCCGCAGGCAGAAATCGACAGCCGACGAGGATGGAACCCTCGACAGCGACCCCGACGAATATGAAGATAACAACGAGTATTACAGACACAGAAGCCGCAACCAGCCCAACAAAACTGGCAGGTGGAGGAATCCAGTCTCCCCTTCGCGTAACAGAGAAAGCGGCTACTACAGGAGCTCGTCCTCAATGCCCGATGTCACATGTGCAGCCTGGTCTAATGGGGTTCGCGATAGCAGGGATCTCACAGGTTCCTTCGGCAATCTTGCTTCCATACCCGCTGGCCTTCCGCGCCTCCACACCCGACGGGAAGGAAGTAGCCAATCTCTCAATCATCCAGGCTCTAGAAAGAGAGCAGCGGCATCAGTAATTCGACCGACAACTCCGAAATCGCCTGTTTCAAGTGTATTTGAAAGTGTGGAAGATTCTGATGAGGAGGATCAGCTACTTGAAGACATTGATGACCAGAATTTCAATTATGGCAATGCCAATGGTGGTGCTGCGGCTGAAGGTTTGACAGGCACAGCTGAAACAAACACAGATATTACAGCATCATCCCTTGTTCCTCCAGATATGGTTAATGCTGGTGAAGACCAGAACCAGAACTCTGGAACCATGATGAGGAAATCACATAGCATATCAGGGGATATTCTTGCTATGCATCCACCAGATCCAATAGCTGCAGATATTCTAAGGAAAGAGCCAGAGCAGGATAATCTTGTACGGTTGAAAATCACTCCCATTGATGCGCCAACAAGTGAGGAGGAGGAGGTATGTCGGATGATGCAAGAGTGCCTTGCCCTGCGAGATAAGTATGTTTTCAGAGAAAAAGTTGTTCCATGGGAGAGAGAAATTACAACAGATCCTAGCACACCAAAACGAAACCCTAAACCATTTTGTTTTGAGGATGAGCCAGCAAGTGAACATAATTTTCAAATGGAGGATGGTGTGGTACATGTTTATCCAAATAAAGAATCAAGCGAAGAACTTTTTCCTGTTGCTGATGCAACAACATTCTTCACTGATGTACATCGGATACTTAGAATCATTTCATTGGGAAATGTTCGTACTTTGTGCCATCATCGACTGCGCCTTTTAGAACAGAAGTTTAGCCTTCATTTAATGCTAAATGCAGACAGAGAATTCATGGCTCAGAAGAGTGCACCCCATCGTGATTTTTACAATGTTAGAAAAGTTGATACCCATGTACATCACTCGGCATGCATGAACCAGAAACATCTGCTGCGTTTTATCAAATCTAAGCTGAAGAAAGAACCGGATGAGGTGGTTATATTCCGGGATGGCAAATATCTCACCTTAAAGGAAGTTTTTGAGAGTTTGGACTTGACAGGGTATGACCTCAATGTTGATCTCCTGGATGTACATGCAGACAAGAATACGTTTCACCGATTTGATAAGTTTAATCTGAAGTATAACCCCTGTGGACAAAGTAGACTCAGAGAAATTTTCCTAAAGCAAGACAATCTCATTCAAGGTCGTTTTCTTGCTGAGCTGACAAAACAAGTATTGTCTGATCTGGAGGCAAGTAAATACCAGATGGCAGAGTATAGAATATCTGTTTATGGAAGGAAACAAAGCGAATGGGACCAGTTGGCAAGTTGGTTTGTTAACAATGAGATATACAGTGAAAATGCTATCTGGTTAATTCAGTTTCCTCGACTGTACAATGTGTACAAGGGAATGGGAATTGTTCGATCTTTTCAAAATATTTTGGATAACATTTTCATTCCTCTTTTTGAGGTTACAGTTGATCCAAGTTCTCATCCTCAACTACACGTCTTCTTGAAACAGGTGGTTGGCTTTGATATGGTGGATGATGAAAGTAAACCTGAAAGGCGTCCCACAAAGCACATGCCAACCCCAGCTCAGTGGACAAATGATTTCAATCCTGCTTTTTCATATTATGCTTACTATTGCTATGCAAATTTGTACACACTCAACAAGCTTCGTGAATCTAAAGGAATGACAACAATTAAATTTCGTCCTCACTGTGGCGAGGCTGGTGATATTGATCACTTGGCAGCTGCGTTCCTGTTGACTCACAATATTGCACATGGAAATAATCTTAGGAAGTCTCCTGCTTTGCAATATTTATTTTATCTTTCCCAGATTGGCTTGGCCATGTCCCCTTTGAGCAACAATTCATTATTTCTGGATTATCACCGAAATCCTTTTCCCATGTTTTTTGCACGTGGCCTCAATGTTTCCCTTTCAACAGACGATCCATTACAAATTCATTTGACAAAAGAACCTCTTGTGGAGGAATACAGTGTTGCTGCTCAGGTTTGGAAGCTCAGTGCTTGTGATCTTTGTGAAATTGCTCGTAATTCTGTCTACCAGTCTGGTTTCTCTCATGCGTGTAAGTTTCATTGGGTTGGAAGAAAGTATTACATCAGAGGTCCTGAAGGGAATGATATACATAAGACAAATGTACCTCATATGCGAGTTGAATTTCGCCATGAGGTCTGGAAAGAAGAGAGGCAATATTTATACCTTGGACAGGCCAAAATCCCTAGAGAAATTGATTTATAGAAACAAGCGTGGTTCTTTCATGTTACAATTAGAGCAAATATATCTCGTTGCTATATAGTTGACTGGAAGATATATATAAATTAGAAGTATTTGTTGAGAAGACTATATATTGATGTTGCAATACTGTAATGGAATGCTAGAATTCAAATGCAAAGCTTCCTGGACTTGTTGCTGGTGTACACAAAGTATATGCAGATATGTTAACCCCATGGTCAATTAATGTGGTGGTTGCGTTGCTTCAAAAATAATAAAGTGGTGAAAATTTCACCTTTTCATTGTCTTTTAATTAACTGGAGTAGTTTATATACTGCTACTCTGTGTAGGTCACTTGTAACTTTATATTAATTCCGTTTTGTTTCCCACATTTGCAGTTTGGGTGAACAAAGAGCATTTGAAATTGGCGGTCCTAAAATGTTTTTCAATATTGAA

Ace file of the UniGene sp_v2.0_unigene14119 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AMP deaminase [Arabidopsis thaliana] ref\|NP_850294.1\| AMP deaminase [Arabidopsis thaliana] sp\|O80452.2\|AMPD_ARATH RecName: Full=AMP deaminase; Short=AtAMPD; AltName: Full=Protein EMBRYONIC FACTOR 1 gb\|AAL07150.1\| putative AMP deaminase [Arabidopsis thalia	-	-	77%
FL-Next	sp=AMP deaminase; Arabidopsis thaliana (Mouse-ear cress).	-	-	31%
Blast2go	amp deaminase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	AMP deaminase.	EC:3.5.4.6	-	0.0	82%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	82%
Blast2go	Biosynthesis of plant hormones	01070	82%
Blast2go	Metabolic pathways	01100	82%
Blast2go	Biosynthesis of secondary metabolites	01110	82%

Source	GOs	Term	Type	Identity
Blast2go	purine ribonucleoside monophosphate biosynthetic process	GO:0009168	Biological Process	82%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	82%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	82%
Blast2go	AMP deaminase activity	GO:0003876	Molecular Function	82%
Blast2go	protein histidine kinase binding	GO:0043424	Molecular Function	82%
Blast2go	cytosol	GO:0005829	Cellular Component	82%
Blast2go	microsome	GO:0005792	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	AMP deaminase	IPR006329	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O80452

Fln msg: your sequence is longer than subject: 900 - 839

Fln protein: MNSSSSSSSVKDASVLQLAMAALLGASVMAVSAFYIHKRSVDQVLKQTLNSRRQKSTADEDGTLDSDPDEYEDNNEYYRHRSRNQPNKTGRWRNPVSPSRNRESGYYRSSSSMPDVTCAAWSNGVRDSRDLTGSFGNLASIPAGLPRLHTRREGSSQSLNHPGSRKRAAASVIRPTTPKSPVSSVFESVEDSDEEDQLLEDIDDQNFNYGNANGGAAAEGLTGTAETNTDITASSLVPPDMVNAGEDQNQNSGTMMRKSHSISGDILAMHPPDPIAADILRKEPEQDNLVRLKITPIDAPTSEEEEVCRMMQECLALRDKYVFREKVVPWEREITTDPSTPKRNPKPFCFEDEPASEHNFQMEDGVVHVYPNKESSEELFPVADATTFFTDVHRILRIISLGNVRTLCHHRLRLLEQKFSLHLMLNADREFMAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLKKEPDEVVIFRDGKYLTLKEVFESLDLTGYDLNVDLLDVHADKNTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVLSDLEASKYQMAEYRISVYGRKQSEWDQLASWFVNNEIYSENAIWLIQFPRLYNVYKGMGIVRSFQNILDNIFIPLFEVTVDPSSHPQLHVFLKQVVGFDMVDDESKPERRPTKHMPTPAQWTNDFNPAFSYYAYYCYANLYTLNKLRESKGMTTIKFRPHCGEAGDIDHLAAAFLLTHNIAHGNNLRKSPALQYLFYLSQIGLAMSPLSNNSLFLDYHRNPFPMFFARGLNVSLSTDDPLQIHLTKEPLVEEYSVAAQVWKLSACDLCEIARNSVYQSGFSHACKFHWVGRKYYIRGPEGNDIHKTNVPHMRVEFRHEVWKEERQYLYLGQAKIPREIDL*

Protein Length: 901

Fln nts: ATGGGGAAGACAACGTCACGTGGCAGAGCCGAGTCAGTTGCATGACCTTGTACAGGACCCTGCATCACCGTTGATAACAATGACAGCCTGCGAAAGCGGAATCACTTTCTAGGCCAATATTTCCGGCCGATTTCTGGTAGCAGTGGGGAAATTTCCGATGGACCTGAAAGTTCAGAGTGCAATCTCAGTCGCCACTTTTAGGTCGGTCGTGACTTTGGCTGTCATTCCATTTTGCGGAAGCTGCAGACTTGGGAGGAGCGAAATGAAATACTTCTGACGTCTTTATTTATTTACCTGAAACTCCGGCCTTGGCTTTAACTAGGTAGATTTTGGGGGCGGGGTTGGATTAGCAGTAGCG_-_ATGAATTCATCCTCGTCTTCATCTTCGGTGAAGGATGCCTCTGTCCTGCAGCTGGCCATGGCGGCCTTGCTGGGGGCCTCCGTGATGGCTGTCTCTGCCTTTTACATTCACAAACGGAGCGTTGATCAGGTCCTCAAACAGACTCTGAACTCCCGCAGGCAGAAATCGACAGCCGACGAGGATGGAACCCTCGACAGCGACCCCGACGAATATGAAGATAACAACGAGTATTACAGACACAGAAGCCGCAACCAGCCCAACAAAACTGGCAGGTGGAGGAATCCAGTCTCCCCTTCGCGTAACAGAGAAAGCGGCTACTACAGGAGCTCGTCCTCAATGCCCGATGTCACATGTGCAGCCTGGTCTAATGGGGTTCGCGATAGCAGGGATCTCACAGGTTCCTTCGGCAATCTTGCTTCCATACCCGCTGGCCTTCCGCGCCTCCACACCCGACGGGAAGGAAGTAGCCAATCTCTCAATCATCCAGGCTCTAGAAAGAGAGCAGCGGCATCAGTAATTCGACCGACAACTCCGAAATCGCCTGTTTCAAGTGTATTTGAAAGTGTGGAAGATTCTGATGAGGAGGATCAGCTACTTGAAGACATTGATGACCAGAATTTCAATTATGGCAATGCCAATGGTGGTGCTGCGGCTGAAGGTTTGACAGGCACAGCTGAAACAAACACAGATATTACAGCATCATCCCTTGTTCCTCCAGATATGGTTAATGCTGGTGAAGACCAGAACCAGAACTCTGGAACCATGATGAGGAAATCACATAGCATATCAGGGGATATTCTTGCTATGCATCCACCAGATCCAATAGCTGCAGATATTCTAAGGAAAGAGCCAGAGCAGGATAATCTTGTACGGTTGAAAATCACTCCCATTGATGCGCCAACAAGTGAGGAGGAGGAGGTATGTCGGATGATGCAAGAGTGCCTTGCCCTGCGAGATAAGTATGTTTTCAGAGAAAAAGTTGTTCCATGGGAGAGAGAAATTACAACAGATCCTAGCACACCAAAACGAAACCCTAAACCATTTTGTTTTGAGGATGAGCCAGCAAGTGAACATAATTTTCAAATGGAGGATGGTGTGGTACATGTTTATCCAAATAAAGAATCAAGCGAAGAACTTTTTCCTGTTGCTGATGCAACAACATTCTTCACTGATGTACATCGGATACTTAGAATCATTTCATTGGGAAATGTTCGTACTTTGTGCCATCATCGACTGCGCCTTTTAGAACAGAAGTTTAGCCTTCATTTAATGCTAAATGCAGACAGAGAATTCATGGCTCAGAAGAGTGCACCCCATCGTGATTTTTACAATGTTAGAAAAGTTGATACCCATGTACATCACTCGGCATGCATGAACCAGAAACATCTGCTGCGTTTTATCAAATCTAAGCTGAAGAAAGAACCGGATGAGGTGGTTATATTCCGGGATGGCAAATATCTCACCTTAAAGGAAGTTTTTGAGAGTTTGGACTTGACAGGGTATGACCTCAATGTTGATCTCCTGGATGTACATGCAGACAAGAATACGTTTCACCGATTTGATAAGTTTAATCTGAAGTATAACCCCTGTGGACAAAGTAGACTCAGAGAAATTTTCCTAAAGCAAGACAATCTCATTCAAGGTCGTTTTCTTGCTGAGCTGACAAAACAAGTATTGTCTGATCTGGAGGCAAGTAAATACCAGATGGCAGAGTATAGAATATCTGTTTATGGAAGGAAACAAAGCGAATGGGACCAGTTGGCAAGTTGGTTTGTTAACAATGAGATATACAGTGAAAATGCTATCTGGTTAATTCAGTTTCCTCGACTGTACAATGTGTACAAGGGAATGGGAATTGTTCGATCTTTTCAAAATATTTTGGATAACATTTTCATTCCTCTTTTTGAGGTTACAGTTGATCCAAGTTCTCATCCTCAACTACACGTCTTCTTGAAACAGGTGGTTGGCTTTGATATGGTGGATGATGAAAGTAAACCTGAAAGGCGTCCCACAAAGCACATGCCAACCCCAGCTCAGTGGACAAATGATTTCAATCCTGCTTTTTCATATTATGCTTACTATTGCTATGCAAATTTGTACACACTCAACAAGCTTCGTGAATCTAAAGGAATGACAACAATTAAATTTCGTCCTCACTGTGGCGAGGCTGGTGATATTGATCACTTGGCAGCTGCGTTCCTGTTGACTCACAATATTGCACATGGAAATAATCTTAGGAAGTCTCCTGCTTTGCAATATTTATTTTATCTTTCCCAGATTGGCTTGGCCATGTCCCCTTTGAGCAACAATTCATTATTTCTGGATTATCACCGAAATCCTTTTCCCATGTTTTTTGCACGTGGCCTCAATGTTTCCCTTTCAACAGACGATCCATTACAAATTCATTTGACAAAAGAACCTCTTGTGGAGGAATACAGTGTTGCTGCTCAGGTTTGGAAGCTCAGTGCTTGTGATCTTTGTGAAATTGCTCGTAATTCTGTCTACCAGTCTGGTTTCTCTCATGCGTGTAAGTTTCATTGGGTTGGAAGAAAGTATTACATCAGAGGTCCTGAAGGGAATGATATACATAAGACAAATGTACCTCATATGCGAGTTGAATTTCGCCATGAGGTCTGGAAAGAAGAGAGGCAATATTTATACCTTGGACAGGCCAAAATCCCTAGAGAAATTGATTTATAG___AAACAAGCGTGGTTCTTTCATGTTACAATTAGAGCAAATATATCTCGTTGCTATATAGTTGACTGGAAGATATATATAAATTAGAAGTATTTGTTGAGAAGACTATATATTGATGTTGCAATACTGTAATGGAATGCTAGAATTCAAATGCAAAGCTTCCTGGACTTGTTGCTGGTGTACACAAAGTATATGCAGATATGTTAACCCCATGGTCAATTAATGTGGTGGTTGCGTTGCTTCAAAAATAATAAAGTGGTGAAAATTTCACCTTTTCATTGTCTTTTAATTAACTGGAGTAGTTTATATACTGCTACTCTGTGTAGGTCACTTGTAACTTTATATTAATTCCGTTTTGTTTCCCACATTTGCAGTTTGGGTGAACAAAGAGCATTTGAAATTGGCGGTCCTAAAATGTTTTTCAATATTGAA

Fln Alignment:

Contig14119___DASVLQLAMAALLGASVMAVSAFYIHKRSVDQVLKQTLNSRRQKSTADEDGTLDSDPDEYEDNNEYYRHRSRNQPNKTGRWRNPVSPSRNRESGYYRSSSSMPDVTCAAWSNGVRDSRDLTGSFGN--LASIPAGLPRLHTRREGSSQSLNHPGSRKRAAASVIRPTTPK
O80452_______________EPNIYQLALAALFGASFVAVSGFFMHFKALNLVLERG-KERKENPDGDE-----------PQNPTLVRRRSQVR--------------RKVNDQYGRSPASLPDAT-PFTDGGGGGGGDTGRSNGHVYVDEIPPGLPRLHTPSEGRASV--HGASSIRKTGSFVRPISPK

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
2592	10		90		0.90298
2594			11	88	0.923564
2595			11	88	0.923564
2598	11		88		0.923564
2720	25		75		0.996473
2770		88		11	0.923564
2771	88		11		0.923564
2881	16			83	0.994512
2882	16			83	0.994512
2903	85		14		0.993533
2905	14			85	0.993533
2906	14	85			0.993533
3004	12			87	0.992554
3007		12		87	0.992554
3013		87	12		0.992554
3019	12			87	0.992554
3020		12		87	0.992554
3134	12	87			0.992554
3135		12		87	0.992554
3137		87		12	0.992554
3208	83			16	0.994512
3210	83			16	0.994512
3225		83		16	0.994512
3261	16			83	0.994512
3262			66	33	1.0
3265	66		33		1.0
3267			33	66	1.0
3268	33			66	1.0
3269		33	66		1.0
3270	33	66			1.0
3271			33	66	1.0
3274	33		66		1.0
3276	66		33		1.0
3279		33	66		1.0
3280	33	66			1.0
3282			33	66	1.0
3283	33	66			1.0
3284		33		66	1.0
3285		66	33		1.0
3483	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
2211	2223	CCT CCT CCT CCT C	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain