SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14107

Length: 1000 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene14107

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	E3 UFM1-protein ligase 1-like protein [Arabidopsis thaliana] sp\|Q9LX73.1\|UFL1_ARATH RecName: Full=E3 UFM1-protein ligase 1 homolog emb\|CAB90949.1\| putative protein [Arabidopsis thaliana] gb\|AEE78135.1\| E3 UFM1-protein ligase 1-like protein [Arabidopsis th	-	-	58%
FL-Next	sp=E3 UFM1-protein ligase 1 homolog; Oryza sativa subsp. japonica (Rice).	-	-	68%
Blast2go	e3 ufm1-protein ligase 1-like protein	-	-	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	0.0	-
Sma3	E3 UFM1-protein ligase 1	IPR018611	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: B9FM64

Fln msg: Distance to subject end: 506 aas, your sequence is shorter than subject: 306 - 812

Fln protein: MDSELAELQRQFQAAQEAKSSVRLSERNVVELVNTLQQLELLDSDLLHTVSGKEYITQDRLRTEMEAEIGRLGRVSLIELADILGVDLYHVERQAEYIVAKNAELMLVQGEILSIVYWDSVAEEINERLQESSQISLAELAAQLHVSSELLTSILEPRLGTIVQGKLEGGQLYTPSYVSRIRAIVRGAARGIMVPTNLSAVWSSLHQLLQEMDGATGGSTEGNFFQALLNSLIKEGEVLGSLRSGISWTPAVFALAQRESVESFFSQNSFIGYDVLNKLAIPQPKQYLQSKYTEGISLETVFMTTL

Protein Length: 307

Fln nts: TATTATTCTAAAAATAGTAGGAACTGACAAGGAAAAGAGTGGCAGATTAAACAGAGAGCCTTGCAGATCTCGTCTGCGAGG_-_ATGGATTCAGAACTTGCGGAATTGCAGAGGCAATTTCAGGCAGCACAGGAAGCAAAGTCCAGCGTGAGATTGTCGGAGAGAAATGTCGTGGAACTTGTCAATACTCTTCAGCAGCTGGAGCTGCTCGACTCTGATTTGCTCCATACCGTCTCCGGCAAAGAATATATCACTCAGGATCGTCTGAGAACTGAAATGGAGGCAGAAATAGGCAGATTGGGACGAGTGTCCTTAATTGAGCTTGCAGATATATTAGGAGTGGACTTATATCATGTGGAGAGACAGGCTGAATATATTGTTGCAAAGAATGCAGAACTAATGCTAGTGCAGGGAGAGATATTGTCAATTGTCTACTGGGACTCTGTAGCTGAGGAAATCAATGAAAGATTGCAAGAGTCTAGCCAAATCTCTTTGGCAGAACTTGCTGCCCAACTGCATGTTAGCTCTGAATTGCTAACTAGTATTTTGGAGCCTCGCCTTGGAACAATTGTACAAGGGAAATTGGAAGGCGGCCAACTTTATACTCCTTCATATGTTTCTCGTATTAGGGCCATTGTACGCGGAGCAGCACGAGGAATTATGGTCCCAACCAACTTATCTGCAGTTTGGAGCTCCTTACATCAGTTGCTTCAAGAAATGGACGGAGCAACTGGTGGTTCTACAGAAGGCAATTTTTTCCAGGCATTGCTAAATAGCCTCATTAAAGAAGGGGAAGTTCTTGGTTCACTCCGGTCAGGAATATCTTGGACACCAGCTGTATTTGCTCTTGCACAACGTGAAAGTGTGGAGTCTTTCTTTTCTCAGAACTCATTCATTGGCTATGATGTTCTCAACAAACTTGCAATTCCCCAGCCTAAACAGTACTTACAGTCCAAATATACAGAAGGTATATCTCTGGAGACAGTCTTCATGACAACCCTTA

Fln Alignment:

Contig14107___MDSELAELQRQFQAAQEAKSSVRLSERNVVELVNTXXXXXXXXXXXXHTVSGKEYITQDRLRTEMEAEIGRLGRVSLIELADILGVDLYHVERQAEYIVAKNAELMLVQGEILSIVYWDSVAEEINERLQESSQISLAELAAQLHVSSELLTSILEPRLGTIVQGKLEGGQLYTPSYVSXXXXXXXXXXXXXMVPTNLSAVWSSLHQLLQEMDGATGGSTEGNFFQALLNSLIKEGEVLGSLRSGISWTPAVFALAQRESVESFFSQNSFIGYDVLNKLAIPQPKQYLQSKYTEGISLETVFM
B9FM64_______________MDAELLELQRQLEAAQSARSSVRLSERNVVELVQKLQERGIIDFELLHTTSGKEYITSDHLKHEIKMEIKKRGRASLVDLSDILGVDLYHVERQSQKVVADDPSLMLINGEIMSQSYWDTVTEEINEKLQERSQIALAEIAAQLHIGSELVVNILEPRLGTIVKGRLEGGQLYTPAYVSRITAMVRGAARGITVPTNLPSVWNSLQLQLQEMHGASGVSVEGSFFQSIFNGLLKEGVVLGSVRAGVQWTPAVFAHAQKESVDAFFSQNSYIGYEVLQKLAIPQPKQYLEARYPDGIALEAVFV

SNPs (tot: 3)

Position	A %	G %	Probability
111	33	66	0.997452
750	66	33	1.0
857	16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain