SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14094

Length: 1434 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene14094

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	glycosyl hydrolase-like prottein 10 [Arabidopsis thaliana] gb\|AAF82251.1\|AC008051_2 Identical to gene RXF12 from Arabidopsis thaliana gb\|AB008015 and contains three Cellulose binding PF\|02018 domains and is a member of Glycosyl hydrolase PF\|00331 family d	-	-	56%
FL-Next	sp=Putative Pol polyprotein from transposon element Bs1; Zea mays (Maize).	-	-	39%
Blast2go	endo- -beta-xylanase a-like	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Endo-1,4-beta-xylanase.	EC:3.2.1.8	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	xylan catabolic process	GO:0045493	Biological Process	75%
Blast2go	endo-1,4-beta-xylanase activity	GO:0031176	Molecular Function	75%
Blast2go	cation binding	GO:0043169	Molecular Function	75%
Blast2go	cell wall	GO:0005618	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 10	IPR001000	-	-
Sma3	Carbohydrate-binding, CenC-like	IPR003305	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P15718

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 114 aas, your sequence is shorter than subject: 344 - 740

Fln protein: KSAYEVSAMVRISSNLASAEVLATIWIQTNDLREQYITMGKVQASSKEWVQLQGKFLLNPEAAKAIAYLEGPPAGIDILVSSFLMCPATKPSPSSAPTIENPAFGLNILENSNLFDGLRGWYPLGSCSLTIATGSPHTIPPAAQESLGWQQSLSGNYILVTNRKQTWEGPAQTLTEKLKLFLTYQVSAWVRLGSGGSGAQKVNVALSVDNKWVNGGQVEADAHLWREVAGSFRLETKPSNVMVYVQGPSPGVDLMVAGLQIFPVDPKARFEHLKKQTEKLRMRDVILKISGGPMLNRLCGFSVKVKQTYNSFPLGSCINRSSLDNEDYVDFFVKNFNWASFSK*

Protein Length: 345

Fln nts: AAATCTGCTTATGAAGTATCAGCAATGGTTCGGATTTCTAGCAACCTTGCTTCTGCAGAGGTGCTAGCCACCATATGGATTCAAACCAATGACCTACGTGAACAATATATTACTATGGGCAAAGTACAGGCCTCTTCAAAGGAATGGGTGCAATTGCAGGGAAAGTTTCTTCTGAACCCTGAAGCTGCCAAAGCAATAGCCTATTTGGAAGGTCCACCTGCTGGCATTGATATTCTTGTTTCCAGTTTCTTGATGTGCCCTGCAACAAAGCCATCTCCTTCATCAGCTCCTACAATTGAGAATCCTGCTTTTGGGCTGAACATTCTAGAGAACAGCAATCTTTTTGATGGCCTGAGAGGGTGGTATCCTCTAGGTTCATGTTCTCTCACTATAGCCACTGGTTCACCTCACACAATTCCTCCGGCAGCACAGGAATCACTGGGGTGGCAACAATCCCTCAGTGGTAACTATATTCTTGTCACCAATCGCAAACAAACCTGGGAAGGTCCAGCACAAACATTGACAGAGAAACTGAAGTTGTTTTTGACATATCAAGTGAGTGCCTGGGTTCGTCTAGGCTCTGGTGGGAGTGGAGCTCAGAAAGTTAATGTTGCACTTAGTGTTGACAACAAGTGGGTTAATGGAGGTCAAGTTGAGGCTGATGCACACTTGTGGAGAGAGGTTGCAGGATCATTTAGATTAGAGACAAAGCCATCAAATGTAATGGTTTATGTGCAAGGTCCCTCACCTGGGGTTGACTTAATGGTAGCTGGGCTGCAGATATTTCCTGTTGATCCGAAAGCACGATTTGAACATCTCAAGAAACAAACTGAGAAGCTGCGTATGCGTGATGTGATCCTCAAAATATCAGGGGGGCCAATGCTGAACAGGCTATGTGGCTTCTCTGTCAAAGTCAAACAGACATACAACAGTTTTCCTTTGGGGTCATGCATCAATAGGAGCAGTCTTGATAATGAAGATTATGTTGACTTCTTTGTCAAAAATTTCAACTGGGCTAGTTTTTCAAAATGAGCTGAAATAGGTATTGGACGGAATCACAAAAAGGGAACTATAATTACAGGGATTCAGATGAGCTCCTTCAGTTTTGTAAGTGCCATGGTATACAAACCAGAGGTCACTGTATCTTCTGGGAAGACATTAACACTGTGCAGCAATGGGTCAAAGAATTGAATCAGAATGACCTACATGCAGCCATCCAGAAACGCATCTCTGATTTGCTTTCAAGATATCGCGGTAAATTCCAGCATTATGATGTAAACAATGAGATGCTTCATGGATCATTCTATCAAGATAGATTAGGCAAGGATATCTGGTCATACATGTTCAAAATGGCTCACCAGCTTGATCCGTTTGCAACTCTGTTTGTTAATGATTACAATGTAGAAGATGGTTCCGATGACAGATCTACTCCAG

Fln Alignment:

Contig14094___LTYQVSAWVRLGSG-GSGAQK-VNVALSVDNKWV-NGGQVEADAHLWREVAGSFRLETKPSNVMVYVQGPSPGVDLMVAGLQIF
P15718_______________VTYCIAGWIDLGDGVAEGADHAVRVRFRVDDGCVVEGGTVCAESGSWTEIKGVFRLKRNARVMEVYVQGAVAGIDVKVTDPQVF

SNPs (tot: 4)

Position	C %	G %	T %	Probability
1170	10		90	0.90298
1340	14		85	0.993533
1364	83	16		0.994512
1398	20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain