SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14080

Length: 1134 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene14080

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thaumatin-like protein n=1 Tax=Cryptomeria japonica RepID=Q5DWG1_CRYJA	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	pathogenesis-related protein 5-like	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to other organism	GO:0051707	Biological Process	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Blue (type 1) copper domain	IPR000923	-	0.0	-
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LP27

Fln msg:

Fln protein: MASERLIAALAMALLLGCGGVSGTVFTLVNRCSEMIWPGVLTGSGGASLAGGGFALPPGQSTQLEAPAGWSGRFWGRTDCTFNASGAGSCATGDCGRGLMCDNAGGLTPVSLAEFTIGNNGNKDFYDVSLVDGYNVPLSISAAGGTGDCRTAGCVADLRSSCPIALSIGGSDGRVIACKSACDAFGSPDYCCTGYHSTAQTCPPTEYSKVFKAACPTAYSYAYDDASSLITCSQADYTITFCPSAASN*

Protein Length: 250

Fln nts: CTATTTATTACAGGGAAGCTCGGCTCGGTTAGTTTCTGCTTAC_-_ATGGCTTCGGAGCGCCTGATCGCAGCGCTGGCAATGGCGCTCTTACTCGGGTGCGGTGGAGTTAGCGGAACAGTGTTCACATTGGTGAACCGGTGCTCGGAAATGATCTGGCCGGGCGTCCTGACGGGAAGTGGCGGGGCGTCCCTCGCTGGAGGTGGCTTCGCCCTCCCACCGGGCCAATCCACGCAGCTGGAGGCCCCCGCGGGATGGTCTGGCCGCTTCTGGGGCCGCACGGACTGTACCTTCAACGCGTCGGGCGCCGGCTCCTGCGCCACGGGAGACTGCGGGCGCGGCCTCATGTGCGATAACGCCGGCGGGTTAACGCCGGTATCCCTGGCAGAATTCACGATCGGCAACAACGGCAACAAGGATTTCTACGACGTTAGTCTCGTCGACGGCTACAACGTCCCCTTGAGCATCAGCGCTGCGGGCGGAACCGGGGACTGCCGGACTGCCGGGTGCGTCGCAGATCTTCGGAGCAGCTGCCCAATCGCGCTCAGCATCGGGGGCAGCGACGGGAGGGTCATTGCCTGCAAGAGCGCCTGCGATGCCTTCGGAAGTCCAGACTATTGTTGCACTGGCTACCACAGCACCGCTCAGACGTGTCCTCCTACCGAATACTCTAAGGTTTTCAAGGCTGCCTGCCCTACGGCGTACAGCTACGCTTATGACGATGCCTCCAGCCTAATCACTTGCAGCCAGGCCGATTACACCATCACCTTCTGTCCATCAGCCGCAAGTAATTAG___AGGGAAATTTTCTTCATTCATTCTGTAATGTTCTCTGATAATACCTGCATATGTTGAAGCGATTTTTCCTAAATTTCGTTTTGGGTAATTCTACGGTCACTGCATCTTCGAATGAACAAGCCCACTTTCACATAAAGTGAGCGGAGGAACTATTCTTTTTCCTGAAAAGAGATAAACATTTACCGCTTGAATTTAAAATAAAATTGTAGAGTAGCTTTGTCTTTTGTAGTGGGAAGGGTATATGTATATGTAATTGTTTGGTAAAATTTACTTCATTTGAAGATCAATATTTTGGTACTTGCACTGTAGCACCGTCTCTCCTGTACTTCGGAATATCTACACAC

Fln Alignment:

Contig14080___GCGGVSGTVFTLVNRCSEMIWPGVLTXXXXXXXXXXXXXXXXXQSTQLEAPAGWSGRFWGRTDCTFNASGAGSCATGDCGRGLMCDNAGGLTPVSLAEFTIGNNGNKDFYDVSLVDGYNVPLSISAAGGTGDCRTAGCVADLRSSCPIALSIGGSDGRVIACKSACDAFGSPDYCCTGYHSTAQTCPPTEYSKVFKAACPTAYSYAYDDASSLITCSQADYTITFCPSAA
B8LP27_______________GCGVVSGTVFTLVNRCSETIWPG-LAGNGGTSLAGGGFALSTGQSVPVNAPTGWSGRFWGRTGCAFSASGVGSCATGNCVHGLKCAGSTGEPPATLAEFTIGGDAGKDFYDVSLVDGYNVPLSIRAAGGTGDCRTAGCSSDLRSSCPAELSVKGSDGRVIACRSACNAFGSAEYCCTGDHGNPQTCSPNKYSQIFKAACPTAYSYAYDDASSLVTCTHADYTITFCPSAA

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
347		20	80		0.995493
348	60			20	0.99255
350	60		20		0.99255
351	60	20	20		0.99255
352		80	20		0.995493
355	20	60		20	0.99255
357		20	60		0.99255
358	20		60	20	0.99255
359		80		20	0.995493
360			80	20	0.995493
361		20	80		0.995493
362	20	20	60		0.99255
366	80	20			0.995493
370		80		20	0.995493
372	20		80		0.995493
864	90		10		0.90298
865	90			10	0.90298
866	90	10			0.90298
867	10			90	0.90298
868		10		90	0.90298
871	10		90		0.90298
948		75		25	1.0
1014		80		20	0.995493
1015		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain