SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14066

Length: 280 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene14066
ACAACTGGCTAGACGAATTGGGTTGCAGTTAGAGGATGCAGAATTGAATGACCTCCTTATTCCTTCCCTGTCTTATGCCAGTGAGACTCTTTATGATGTGGACCTTGTGCAGACAATATTGGAGTATTTCATGAGAGAGAGCATGAGTCCTCCCACCAGCCCTGTCCGGTCAAAGCATACGAACATGAAGCGTAGATCAAGGTCATCTGAATTTGTTAATTTTGTGGAGAAGAGAATATCTTCTGCAACCTACAACTCAAAGCTAAAAGTTGCAAAACTG

Ace file of the UniGene sp_v2.0_unigene14066

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Signal transducer, putative n=1 Tax=Ricinus communis RepID=B9SVL5_RICCO	-	-	3.0e-22	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	phototropic-responsive nph3-like protein	-	-	2.53084e-29	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	signal transduction	GO:0007165	Biological Process	2.53084e-29	72%
Blast2go	response to light stimulus	GO:0009416	Biological Process	2.53084e-29	72%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	2.53084e-29	72%

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	NPH3	IPR004249	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	BTB/POZ fold	IPR011333	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPD8

Fln msg: Distance to subject end: 228 aas, your sequence is shorter than subject: 93 - 648

Fln protein: QLARRIGLQLEDAELNDLLIPSLSYASETLYDVDLVQTILEYFMRESMSPPTSPVRSKHTNMKRRSRSSEFVNFVEKRISSATYNSKLKVAKL

Protein Length: 94

Fln nts: ACAACTGGCTAGACGAATTGGGTTGCAGTTAGAGGATGCAGAATTGAATGACCTCCTTATTCCTTCCCTGTCTTATGCCAGTGAGACTCTTTATGATGTGGACCTTGTGCAGACAATATTGGAGTATTTCATGAGAGAGAGCATGAGTCCTCCCACCAGCCCTGTCCGGTCAAAGCATACGAACATGAAGCGTAGATCAAGGTCATCTGAATTTGTTAATTTTGTGGAGAAGAGAATATCTTCTGCAACCTACAACTCAAAGCTAAAAGTTGCAAAACTG

Fln Alignment:

Contig14066___LARRIGLQLEDAELNDLLIPSLSYASETLYDVDLVQTILEYFM
B8LPD8_______________LERRIGLQLEHATLDDLLIPSYSYTVETLYDIDCVQRILQHFM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain