SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14016

Length: 966 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene14016 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WAK-like kinase n=1 Tax=Solanum lycopersicum RepID=Q6QLL5_SOLLC	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	wall-associated receptor kinase-like 14-like	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	72%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	72%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	72%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	72%
Blast2go	mitochondrion	GO:0005739	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	EGF-like calcium-binding	IPR001881	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	EGF-like domain	IPR006209	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR013091	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Wall-associated kinase	IPR013695	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EGF-like calcium-binding, conserved site	IPR018097	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: Distance to subject end: 217 aas, your sequence is shorter than subject: 322 - 656

Fln protein: RRDLGCHSFQLGWWIEGDCSNKCSTNGNCTQFVSPNTGNPVHKCSCNDGFVGDGYLQGDGCRKEKCNPLTEHCGGVTGVAVLVGGLSAGATLVVVIVLLYCFFKKKALANERRRSRKKLLSANGGSFGIPIFTYKELEKATKGFSEEERLGNGAFGTVYAGKLKGDCPVAVKKIRHIDTHGIEQMMNEIKLLSSVEHPNLVRLMGCCLENGEPILVYEYMPNGTLGQHLQRERGEGLSWAQRIRLASETADALAYLHSAINPPIYHRDVKSSNILLDYSFNSKVADFGLSRIVLTESSHISTVPQGTPGYLDPQYHQNFHLS

Protein Length: 323

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCAGCTTGGATGGTGGATTGAAGGTGATTGTTCAAACAAGTGCTCAACAAACGGGAATTGCACACAGTTCGTTTCTCCAAACACAGGCAATCCAGTGCATAAATGCTCCTGTAATGACGGCTTCGTTGGAGATGGATATTTACAGGGCGATGGATGTCGCAAAGAGAAGTGTAATCCTTTGACTGAACATTGTGGCGGGGTGACTGGAGTGGCTGTTCTCGTCGGAGGGTTAAGTGCAGGGGCGACATTGGTGGTGGTGATAGTCCTGCTATACTGCTTCTTCAAGAAGAAGGCTCTGGCAAACGAAAGGAGGAGGAGCCGAAAGAAACTCCTCTCGGCCAACGGTGGATCCTTCGGAATCCCAATTTTCACATACAAGGAGCTGGAGAAGGCCACAAAGGGCTTCTCCGAAGAAGAAAGATTGGGAAATGGCGCGTTTGGAACGGTCTATGCCGGGAAACTCAAAGGCGACTGTCCCGTGGCCGTCAAAAAGATCAGACATATCGACACCCATGGAATCGAACAGATGATGAACGAAATAAAGCTTCTGTCATCTGTGGAACATCCAAACCTGGTGCGTCTGATGGGCTGCTGCCTTGAGAATGGAGAGCCCATACTCGTCTACGAGTACATGCCCAACGGAACTCTTGGTCAGCACCTACAGCGCGAGAGGGGCGAGGGGCTATCCTGGGCGCAGAGAATCAGGCTGGCATCCGAGACCGCGGACGCCCTGGCTTACCTTCACTCGGCTATAAACCCGCCAATTTATCATAGGGATGTAAAATCCAGCAACATTTTACTGGACTACAGCTTCAATTCAAAAGTAGCGGATTTCGGGCTCTCAAGGATTGTTTTAACAGAATCCTCGCACATATCCACGGTCCCGCAGGGAACCCCGGGTTACCTGGACCCACAATACCACCAGAACTTCCACCTCTCC

Fln Alignment:

Contig14016___GGSFGIP-IFTYKELEKATKGFSEEERLGNGAFGTVYAGKLKGDCPVAVKKIRHIDTHGIEQMMNEIKLLSSVEHPNLVRLMGCCLENGEPILVYEYMPNGTLGQHLQRERGEGLSWAQRIRLASETADALAYLHSAINPPIYHRDVKSSNILLDYSFNSKVADFGLSRIVLTESSHISTVPQGTPGYLDPQY
C0PRI9_______________GISLGISRTFTYEDLEAATNGFSRTNLLGQGGFGYVYKGILPGSKTIAVKQLKVGGSQGEREFQAEVEIISRVHHRHLVSLVGYCIAGSQRLLVYEFVPNDTLEHHLHGKGQPNMEWPTRLKIAIGAARGLAYLHEDCYPKIIHRDIKASNILLDSNFEAKVADFGLAKLASEDFTHVSTRVMGTFGYLAPEY

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
355		66	33		0.997452
668	10		90		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain