SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene14008

Length: 453 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene14008
GCTACATCTTGTTGCTGTTGCTTCAGATGGCCGACGGATGTACCTCACTACTACTCCTAGCATTGGTACTGGTGGTCCTGTTCGAGGATTGACTGGACTGAGCACCATTCATAATAGACCATCAGCTTTAAAAGTAGTAACAACACGGCCTTCTCCTTCAATTGGACTTGGCAGTGGTATTACATTTGGGAGCCTTTCGATCAGTGGCCGTCCACAAGCTGACAGCTTGGTGATGAAAGTTGAAACTGCTTACTATTCTGGTGGTCTTCTATTGCTTTCTGAATCATCACCTGCAACCACATCAAGGATGCTAATTGTTAATAAGGACTTGACTGTACCTTTGATGACATCTGGCAGCTTTGCCTTGGCTGGAGTAGGAACTACAGGTAGAGGTCCCCGCCCATTAAGAGAAACAGTTTCTCCTTTGTCAGTTGAGGGTAGAACACTTTCCAT

Ace file of the UniGene sp_v2.0_unigene14008

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F10B6.25 n=2 Tax=Arabidopsis thaliana RepID=Q9LQU6_ARATH	-	-	1.0e-24	44%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	56%
Blast2go	nuclear pore complex protein nup155-like	-	-	4.00635e-38	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	4.00635e-38	65%
Blast2go	nucleolus	GO:0005730	Cellular Component	4.00635e-38	65%
Blast2go	plasma membrane	GO:0005886	Cellular Component	4.00635e-38	65%
Blast2go	chloroplast	GO:0009507	Cellular Component	4.00635e-38	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleoporin, Nup155-like	IPR004870	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HFD8

Fln msg: Distance to subject end: 1012 aas, your sequence is shorter than subject: 150 - 1496

Fln protein: LHLVAVASDGRRMYLTTTPSIGTGGPVRGLTGLSTIHNRPSALKVVTTRPSPSIGLGSGITFGSLSISGRPQADSLVMKVETAYYSGGLLLLSESSPATTSRMLIVNKDLTVPLMTSGSFALAGVGTTGRGPRPLRETVSPLSVEGRTLS

Protein Length: 151

Fln nts: GCTACATCTTGTTGCTGTTGCTTCAGATGGCCGACGGATGTACCTCACTACTACTCCTAGCATTGGTACTGGTGGTCCTGTTCGAGGATTGACTGGACTGAGCACCATTCATAATAGACCATCAGCTTTAAAAGTAGTAACAACACGGCCTTCTCCTTCAATTGGACTTGGCAGTGGTATTACATTTGGGAGCCTTTCGATCAGTGGCCGTCCACAAGCTGACAGCTTGGTGATGAAAGTTGAAACTGCTTACTATTCTGGTGGTCTTCTATTGCTTTCTGAATCATCACCTGCAACCACATCAAGGATGCTAATTGTTAATAAGGACTTGACTGTACCTTTGATGACATCTGGCAGCTTTGCCTTGGCTGGAGTAGGAACTACAGGTAGAGGTCCCCGCCCATTAAGAGAAACAGTTTCTCCTTTGTCAGTTGAGGGTAGAACACTTTCCAT

Fln Alignment:

Contig14008___LHLVAVASDGRRMYLTTTPSIGTGGPVRGLTGLSTIHNRPSALKVVTTRPSPSIGLGSGITFGSLSISGRPQADSLVMKVETAYYXXXXXXXXXXXPATTSRMLIVNKDLTVPLMTSGSFALAGVGTTGRGPRPLRETVSPLSVEGRTL
F6HFD8_______________LHLVAVLSDGRRMYLSTAPSSGNSGAVGGLSGFNTSHHKPNCLKVVTTRPSPPLGVTGGLAFGAISLSSRTQNEDLALKVESAYYSAGALVLSDSSPPTMSSLLIVGRDSSTQSSVSG-----GLGTTARTSRALRESVSSLPVEGRML

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain