SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13987

Length: 936 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene13987

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana] sp\|O82190.2\|RDR3_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 3; Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase 3 gb\|AEC06942.1\| RNA-dependent RNA polymerase-like prot	-	-	43%
FL-Next	sp=Probable RNA-dependent RNA polymerase 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	43%
Blast2go	rna-dependent rna polymerase family protein	-	-	56%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA-dependent RNA polymerase, eukaryotic-type	IPR007855	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O82190

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 575 aas, your sequence is shorter than subject: 311 - 992

Fln protein: GQKTRSLQNPPNYQFSQNI*KHWGSLTFPKHFLC*AFVTPYALEDVLSVDFINGLQDLPMVAVESNLRQELAMKLGSVSHFERKKYDWDPNKMYEYHCHVDREGNCVFKGPSLANTGNHLQRVLGDSNVLQVHFAEELLQEGVDQNEKNGSAYYKHKPSIDERNTYHRLAKEGIFVGLRLYQFFVFKDGGKERRKNPMSSSVKCYFVCTKSFAEVDEKSPYILFNKSIQEARCLFMHLHTVASLEKYISRFTLILSKTIPFGGCISDVNFIRVADIPCLDENEMEVYDLNGELLIHTNGTGFISEDLASQC

Protein Length: 312

Fln nts: ATGGGCAAAAGACTCGATCGCTACAAAACCCTCCAAACTACCAGTTTTCACAAAACATCTGAAAGCATTGGGGAAGCTTGACTTTCCCAAAGCATTTTCTGTGTTAAGCCTTTGTTACACCGTATGCACTGGAAGACGTTTTATCAGTTGATTTTATAAATGGCCTGCAAGACTTGCCAATGGTTGCTGTAGAGTCAAATCTTAGGCAAGAATTGGCCATGAAGCTTGGCTCAGTTTCTCATTTTGAAAGAAAGAAGTATGATTGGGACCCGAATAAAATGTACGAGTATCATTGCCATGTTGATCGTGAAGGAAATTGTGTATTCAAGGGCCCATCTTTGGCAAATACGGGAAATCATTTGCAAAGAGTTTTAGGCGATTCAAATGTCCTGCAAGTCCACTTTGCTGAGGAGTTGCTTCAAGAGGGAGTAGATCAAAATGAAAAGAATGGAAGTGCATATTACAAACATAAACCAAGCATAGATGAAAGAAACACATATCATAGGCTGGCAAAAGAAGGGATTTTTGTAGGTTTACGTCTATACCAATTTTTCGTATTTAAGGATGGTGGCAAGGAAAGAAGGAAAAACCCCATGTCATCATCAGTCAAATGTTACTTTGTTTGCACCAAATCATTTGCAGAAGTAGATGAAAAAAGTCCATACATTTTGTTTAACAAATCTATCCAGGAGGCGCGATGCCTGTTTATGCATTTGCATACTGTTGCCAGTTTGGAGAAGTACATATCTCGGTTTACATTGATTCTTTCAAAAACCATTCCCTTTGGAGGTTGTATCTCAGATGTAAATTTTATCCGTGTGGCAGATATACCATGTTTGGATGAGAATGAAATGGAGGTTTATGACTTGAATGGAGAGCTTCTAATACATACTAATGGCACTGGATTTATATCTGAAGATTTGGCTTCACAATGCC

Fln Alignment:

Contig13987___GSLTFPKHFLC*AFVTPYAL-EDVLSVDFINGLQDLPMVAVESNLRQELAMKLGSVSHFERKKYDWDPNKMYEYHCHVDREGNCVFKGPSLANTGNHLQRVLGDSNVLQVHFAEELLQEGVDQNEKNGSAYYKHKPSIDERNTYHRLAKEGIFVGLRLYQFFVFKDGGKERRKNPMSSS-VKCYFVCTKSFAEVDEKSPYILFNKSIQEARCLFMHLHTVASLEKYISRFTLILSKTIPFGGCISDVNFIRVADIPCLDENEMEVYDLNGELLIHTNGTGFISEDLASQC
O82190_______________GELEFKKAFLLLSYIGGESLVEEVISGDQIRKWKDLPMVSYEAAVWNRLGQRYCSPKE-RRRPLEGDSGMTHYYQCHVATDGSYKFKGHLLENTGTHLHKVLGDDNVLTVKFDKVL-----------GVETYCN----DLYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKGVKCYFIRTDSTASIDMQNPYIFAGKSMHEARMHFMHVNTLSSLPNYMSRFSLILSKTKTLEVDMTGITFEQIDDIHCHDQDDKDVLDKNGKPCIHSDGTGYISEDLARMC

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
459		20		80	0.995493
468		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain