SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13866

Length: 1092 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene13866

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pfam09764, WDYHV, Uncharacterized conserved protein	-	-	43%
FL-Next	sp=Protein N-terminal glutamine amidohydrolase; Arabidopsis thaliana (Mouse-ear cress).	-	-	49%
Blast2go	protein n-terminal glutamine amidohydrolase	-	-	67%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on carbon-nitrogen bonds, other than peptide bonds, In linear amides.	EC:3.5.1.-	-	0.0	67%

Source	KEGGs	Term	Identity
Blast2go	Lysine biosynthesis	00300	67%
Blast2go	Fluorobenzoate degradation	00364	67%
Blast2go	Glutathione metabolism	00480	67%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	67%
Blast2go	Lipopolysaccharide biosynthesis	00540	67%
Blast2go	Sphingolipid metabolism	00600	67%
Blast2go	Metabolic pathways	01100	67%
Blast2go	Biosynthesis of secondary metabolites	01110	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	GO:0016811	Molecular Function	0.0	67%
Blast2go	cytoplasm	GO:0005737	Cellular Component	0.0	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O22944

Fln msg: your sequence is longer than subject: 274 - 221

Fln protein: MSFYCPYVRCCAHEVTSRLPVLHVFLVSIRVLSVRAMGWIMALSSRAVGSTFANGDGSSSHVALERSDFTYTSQYCEENVYMLCKKLCSARVADQEGSNLFVVFISNENRQVPLWNQKASKGTEGLVIWDYHVICVQKTTEKDTQFQVWDLDTVLPFPVPLHQYITEAIRPSLPLHRKFRRLFRLIHAPIFLHYFASDRRHMRNAEGKWIAPPPPHNCIIAEDGTVHNLDVFISMTEENVSSKLEGAMTDFSQLQYGIVVDERKLEEFFSKAV*

Protein Length: 275

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGATTTTTG_-_ATGAGTTTTTATTGCCCATACGTCAGATGTTGTGCCCACGAAGTCACCTCCCGACTACCTGTATTACATGTCTTCTTAGTTTCTATAAGAGTTTTGTCCGTTCGAGCGATGGGGTGGATCATGGCGCTGTCATCTCGGGCGGTTGGGTCTACATTTGCAAACGGAGACGGGTCGTCCTCTCATGTTGCACTTGAGCGATCCGACTTCACTTACACCTCTCAATACTGTGAGGAAAACGTTTACATGCTTTGCAAAAAGTTATGCAGTGCTCGGGTTGCAGATCAAGAAGGGTCCAATCTTTTTGTTGTCTTCATCTCCAATGAAAATAGACAGGTGCCATTGTGGAATCAGAAGGCCAGCAAGGGGACTGAAGGACTGGTGATATGGGATTACCATGTAATTTGTGTTCAGAAAACGACAGAAAAGGATACCCAATTTCAAGTGTGGGATTTGGATACAGTGCTTCCATTCCCTGTGCCATTGCATCAATACATCACTGAAGCAATCCGACCATCTTTGCCTTTGCATCGAAAGTTCCGCAGGCTTTTCCGTTTAATACATGCTCCTATTTTCCTTCACTATTTTGCATCTGATAGAAGGCACATGAGAAATGCAGAAGGGAAATGGATTGCACCTCCTCCTCCACACAACTGCATTATTGCAGAAGATGGTACTGTGCATAATCTGGATGTGTTCATTTCGATGACTGAAGAAAATGTTAGCTCAAAATTGGAAGGAGCGATGACTGATTTTTCACAGCTACAATATGGGATTGTTGTAGATGAAAGAAAGTTAGAAGAATTCTTTAGCAAAGCTGTATAA___AAATCAACATATGGTGTTCACTATGTCCATTCTAGGAGTTTATATCAACATAGCTTTTATTTTTCAAGTTTGGAGCCACATGAGAAACAAAAGTGCTTGCTGTTCAGGAGACTGAAAAATAGGGTCTGTGGTTTCCTTTGCCATTTGGCCAGGGTCTTTCCTCATACCGTTGTCTTCGATCTCTCCAGACCTGATATTCTCAAATTATAAAATGGAAATAAATATTTCTTGCATTTC

Fln Alignment:

Contig13866___SSSHVALERSDFTYTSQYCEENVYMLCKKLCSARVADQEGSNLFVVFISNENRQVPLWNQKASKGTEGLVIWDYHVICVQKTTEKDTQFQVWDLDTVLPFPVPLHQYITEAIRPSLPLHRKFRRLFRLIHAPIFLHYFASDRRHMRNAEGKWIAPPPPHNCIIAEDGTVHNLDVFISMTEENVSSKLE-GAMTDFSQLQYGIVVDERKLEEFFSK
O22944_______________TSEPIAMDATRFQHTPYYCEENVYLLCKTLCENGVAEATCSDLFVVFISNEKKQVPLWHQKASTRADGVVLWDYHVICVQRKKESDSEPLVWDLDSTLPFPSPLASYVTETIQPSFQLFAEYQRFFRIVHAPLFFKHFASDRRHMKEPDGSWTAQPPPYEPIVAQDGILHNLSEYIAMSGADTLSSLDPETVTAAISQKLGVVVSHTQLQDLFTK

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
523	90		10		0.90298
526	90		10		0.90298
527	90			10	0.90298
528			10	90	0.90298
531	90	10			0.90298
533		90		10	0.90298
534	90		10		0.90298
538	90			10	0.90298
540		10	90		0.90298
555		10		90	0.90298
579	87			12	0.992554
580			87	12	0.992554
581			85	14	0.993533
583			14	85	0.993533
584		14		85	0.993533
704	81	18			0.999994
708		18	81		0.999994
710		45		54	1.0
713		18		81	0.999994
714			81	18	0.999994
717		81	18		0.999994
718	81	18			0.999994
720	81		18		0.999994
724	18			81	0.999994
725		18	81		0.999994
726			81	18	0.999994
727	81	18			0.999994
728	16			83	0.999991
748	83		16		0.999991
815		11		88	0.923564
818	88	11			0.923564
824	88	11			0.923564
825	88	11			0.923564
826			88	11	0.923564
827	88			11	0.923564
828	88		11		0.923564
829	88		11		0.923564
830		11	88		0.923564
832			11	88	0.923564
833	88			11	0.923564
834		11	88		0.923564
836	88	11			0.923564
837			88	11	0.923564
838	88	11			0.923564
1013			50	50	1.0
1016	12	87			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain