SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13864

Length: 2167 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene13864
CGTCGTGACCGTCGTGACACTGGAATAGACCTCCCTCTCAATCATCCAAGCAATTGCCCCATAATCATTTCAGATCTGCGGCTCTTGGATTTGTTCTGCGGCTCCCTGCGGTCATTGAAACTTGTGGATCTGCGGCTCTTCGATCTTTTTCTGCGGCTCTCGGATTATGATCTCCAACTAAACAAACGTACGGTGAAAAGCAGCAGCACGACCTCCAACAAAACAAACGTACGGTGAAAAGCAGCAGCACGCCCTTCCAAGGAAAGCACAAGCAAATAACTAGTCTGGTAATTAAACTGTCTTTCACTTCGTAGGATGCAATTAGCAATGATGGGCACGCAATCAAACTCTCCGAGTCTTTGTGGGTCTGCCGATAAATCAACATCCAGCAGAGGAAAACAGGTTTTGTTTGGACATAGACTGTAGCCACGGCAATGGGTTTGCCAGCTGATAAATGGAAGAAGAAGAGCAAGAGCTCTTCATTTCAGGGCGGCAGCAGCTGCAATAGTAGATGTAAACTCCAGGTGTGCACAATCCTATTTATCTGCTTCCTCTTTTTCTCCATCAAATACTATTCTCTACCCACATCAATTACAATATCAATATCAAAACCGGAATCTCCTCTACCGACTTCAATTTCAGTATCAAGATCAAAATCAGAATCTAAAGAAGCTCTGGTAGGTGCTGGGGAATATCCCCAATGCAGCACCCAAAACGAGAACAGGCCTACACCTGATTCCTTGAAAGGGCTTCCCAAGGCGGAGAAATACATGTGGTTTGCCCCACACAGTGGGTTTAGCAACCAAGTAGGAGAGCTGAAGAATGCACTGATTATAGCAGCGATCCTCAACAGAACTCTTATCATTCCACCAATTTTGGATCACCACGCTGTGGCCTTGGGAAGCTGCCCCAAATTCAGAGTTCAGCCTGCACATGAACTTCGGAATTCTGTATGGGATCATGTCATCCACCTCATGCAAAGTTCAAGGTACGTTTCTATAGCAGACGTTATTGATCTGTCTAAATTGATCTCTTCGTCTCTGGTGAGTACTGTTGATTTTCGGGTCTTTGCTTCACTGTGGTGTGGCCTAGATATTGGGTTATCCTGTTCTGGAAAGCTATGCCATAGCTTGTCCAGAAGTGTTAAAGCATGGGGTAGTCCTAGAACGTGTAGGAATCTGTTCTCAGGTCTTGAGACAAGTCTACCACATTGCGTGTATGGAGTTGAAGAAGATTGTAAAACAACAGTATGGACTTACCAACAGGAGTCTGATGATGCATTAGATTCACTTCAGCCAGATGACAGCTTAAGGAAGAGGAAGAAAATTGATTATGTCAGAAAGCGTCGAAACATAGACAGTGTTCTTGGGCCTGGATCAATGGCAGATAATGCCACTGTTCTTCTCTTTGGGACCCTCTTCTCAGCTCCTTACAAAGGCTCAGAGCTGTATATTGACATTCATGAGGCTCCTAAAGATGAACGGATACAATCTCTGCTACAAAATATTGAATTTCTACCATTTACCCCAGAGATTATAAATGCTGGGAAGGAATATGCCGGAAGAAAGATAAAGAATCCTTTTCTATGTGCTCAGCTCAGACTGCTGGATGGTCAGTTCAAGAATCATTGGAAAACAACATTTTCTGTGTTGAAGGATAAACTCAAAGTTTTGCAGGGGCAGTCCCAGGGTAGAAGCAAACTCACACATATTTTTCTCATGACAGACCTTCCAGCAATTAACTGGACTGGAACATTAATTGGCGACTTGGCTGCTGATTCCAAAGCTTATAAATTGCATATCTTGAACGAGAAAGATGATCTCTTTGTAAACACGGCTAAAAATCTTATGAGTAGAGAGTATGGAATTAGATCAGGGTTTCTACCAAGTTTCCTTAAAAATGTGAGCAAGAATGAAGAATATCGTTCAAAAGTGTTACCCGATATTCTTCTTTATATAGAAGAAACAGTATGCAGTTGTGCTTCGTTAGGTTTTGTTGGAACTGCTGGATCTACTATTGCTGATAACATAGAACAAATGAGGAAACACAATGTGTGTTCCTTATCATAGTACAGTTTTTGGAGCAAATGAATATGGTCCTATGTTTGCATCGATGTTTTATCTTCTGTTCCATGGGCAGAGTTTGGACTTATACAATAGAGTCTTTC

Ace file of the UniGene sp_v2.0_unigene13864 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Os10g0561200 protein; Oryza sativa subsp. japonica (Rice).	-	-	58%
Blast2go	o-fucosyltransferase family protein	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	71%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	0.0	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: Q0IVP4

Fln msg: your sequence is longer than subject: 545 - 503

Fln protein: MGLPADKWKKKSKSSSFQGGSSCNSRCKLQVCTILFICFLFFSIKYYSLPTSITISISKPESPLPTSISVSRSKSESKEALVGAGEYPQCSTQNENRPTPDSLKGLPKAEKYMWFAPHSGFSNQVGELKNALIIAAILNRTLIIPPILDHHAVALGSCPKFRVQPAHELRNSVWDHVIHLMQSSRYVSIADVIDLSKLISSSLVSTVDFRVFASLWCGLDIGLSCSGKLCHSLSRSVKAWGSPRTCRNLFSGLETSLPHCVYGVEEDCKTTVWTYQQESDDALDSLQPDDSLRKRKKIDYVRKRRNIDSVLGPGSMADNATVLLFGTLFSAPYKGSELYIDIHEAPKDERIQSLLQNIEFLPFTPEIINAGKEYAGRKIKNPFLCAQLRLLDGQFKNHWKTTFSVLKDKLKVLQGQSQGRSKLTHIFLMTDLPAINWTGTLIGDLAADSKAYKLHILNEKDDLFVNTAKNLMSREYGIRSGFLPSFLKNVSKNEEYRSKVLPDILLYIEETVCSCASLGFVGTAGSTIADNIEQMRKHNVCSLS*

Protein Length: 546

Fln nts: CGTCGTGACCGTCGTGACACTGGAATAGACCTCCCTCTCAATCATCCAAGCAATTGCCCCATAATCATTTCAGATCTGCGGCTCTTGGATTTGTTCTGCGGCTCCCTGCGGTCATTGAAACTTGTGGATCTGCGGCTCTTCGATCTTTTTCTGCGGCTCTCGGATTATGATCTCCAACTAAACAAACGTACGGTGAAAAGCAGCAGCACGACCTCCAACAAAACAAACGTACGGTGAAAAGCAGCAGCACGCCCTTCCAAGGAAAGCACAAGCAAATAACTAGTCTGGTAATTAAACTGTCTTTCACTTCGTAGGATGCAATTAGCAATGATGGGCACGCAATCAAACTCTCCGAGTCTTTGTGGGTCTGCCGATAAATCAACATCCAGCAGAGGAAAACAGGTTTTGTTTGGACATAGACTGTAGCCACGGCA_-_ATGGGTTTGCCAGCTGATAAATGGAAGAAGAAGAGCAAGAGCTCTTCATTTCAGGGCGGCAGCAGCTGCAATAGTAGATGTAAACTCCAGGTGTGCACAATCCTATTTATCTGCTTCCTCTTTTTCTCCATCAAATACTATTCTCTACCCACATCAATTACAATATCAATATCAAAACCGGAATCTCCTCTACCGACTTCAATTTCAGTATCAAGATCAAAATCAGAATCTAAAGAAGCTCTGGTAGGTGCTGGGGAATATCCCCAATGCAGCACCCAAAACGAGAACAGGCCTACACCTGATTCCTTGAAAGGGCTTCCCAAGGCGGAGAAATACATGTGGTTTGCCCCACACAGTGGGTTTAGCAACCAAGTAGGAGAGCTGAAGAATGCACTGATTATAGCAGCGATCCTCAACAGAACTCTTATCATTCCACCAATTTTGGATCACCACGCTGTGGCCTTGGGAAGCTGCCCCAAATTCAGAGTTCAGCCTGCACATGAACTTCGGAATTCTGTATGGGATCATGTCATCCACCTCATGCAAAGTTCAAGGTACGTTTCTATAGCAGACGTTATTGATCTGTCTAAATTGATCTCTTCGTCTCTGGTGAGTACTGTTGATTTTCGGGTCTTTGCTTCACTGTGGTGTGGCCTAGATATTGGGTTATCCTGTTCTGGAAAGCTATGCCATAGCTTGTCCAGAAGTGTTAAAGCATGGGGTAGTCCTAGAACGTGTAGGAATCTGTTCTCAGGTCTTGAGACAAGTCTACCACATTGCGTGTATGGAGTTGAAGAAGATTGTAAAACAACAGTATGGACTTACCAACAGGAGTCTGATGATGCATTAGATTCACTTCAGCCAGATGACAGCTTAAGGAAGAGGAAGAAAATTGATTATGTCAGAAAGCGTCGAAACATAGACAGTGTTCTTGGGCCTGGATCAATGGCAGATAATGCCACTGTTCTTCTCTTTGGGACCCTCTTCTCAGCTCCTTACAAAGGCTCAGAGCTGTATATTGACATTCATGAGGCTCCTAAAGATGAACGGATACAATCTCTGCTACAAAATATTGAATTTCTACCATTTACCCCAGAGATTATAAATGCTGGGAAGGAATATGCCGGAAGAAAGATAAAGAATCCTTTTCTATGTGCTCAGCTCAGACTGCTGGATGGTCAGTTCAAGAATCATTGGAAAACAACATTTTCTGTGTTGAAGGATAAACTCAAAGTTTTGCAGGGGCAGTCCCAGGGTAGAAGCAAACTCACACATATTTTTCTCATGACAGACCTTCCAGCAATTAACTGGACTGGAACATTAATTGGCGACTTGGCTGCTGATTCCAAAGCTTATAAATTGCATATCTTGAACGAGAAAGATGATCTCTTTGTAAACACGGCTAAAAATCTTATGAGTAGAGAGTATGGAATTAGATCAGGGTTTCTACCAAGTTTCCTTAAAAATGTGAGCAAGAATGAAGAATATCGTTCAAAAGTGTTACCCGATATTCTTCTTTATATAGAAGAAACAGTATGCAGTTGTGCTTCGTTAGGTTTTGTTGGAACTGCTGGATCTACTATTGCTGATAACATAGAACAAATGAGGAAACACAATGTGTGTTCCTTATCATAG___TACAGTTTTTGGAGCAAATGAATATGGTCCTATGTTTGCATCGATGTTTTATCTTCTGTTCCATGGGCAGAGTTTGGACTTATACAATAGAGTCTTTC

Fln Alignment:

Contig13864___KAEKYMWFAPHSGFSNQVGELKNALIIAAILNRTLIIPPILDHHAVALGSCPKFRVQPAHELRNSVWDHVIHLMQSSRYVSIADVIDLSKLISSSLVSTVDFRVFASLWCGLDIGLSCSGKLCHSLSRSVKAWGSPRTCRNLFSGLETSLPHCVYGVEEDCKTTVWTYQQESDDALDSLQPDDSLRKRKKIDYVRKRRNIDSVLGPGSMADNATVLLFGTLFSAPYKGSELYIDIHEAPKDERIQSLLQNIEFLPFTPEIINAGKEYAGRKIKNPFLCAQLRLLDGQFKNHWKTTFSVLKDKLKVL---QGQSQGRSKLTHIFLMTDLPAINWTGTLIGDLAADSKAYKLHILNEKDDLFVNTAKNLMSREYGIRSGFLPSFLKNVSKNEEYRSKVLPDILLYIEETVCSCASLGFVGTAGSTIADNIEQMRKHNVCSL
Q0IVP4_______________EGERFLWYAPHSGFSNQVGELRNAAVAAALLNRTLVVPPVLDHHAVVLGSCPKFRVADASDLRAAVWDHSMQLLRERRYVSMGDIIDLSPI--KATVRTIDFRVFVSLWCGVDMRKTCFSGLCCAVSGGGSLPGDYDRCRSMLSGLGGSENGCVYPVQDDCRTTVWTYQENNDGALDSFQPDEDLKKRKKISYVRRRKDMYKALGPGSEAEDASLLAFGTLFSGPYKGSESYFDIHESPKDRRLQTILEKVEFLPFAPEIIATGKEFARKKIKEPFLCAQLRLLDGQFKNHWKATFSALKEKLKAVALEMKKTQGSGPI-HMFMMTDLPPANWSKTYLADIAKDGR-YKLHTLKESDELVAQTAERLMAAEHGVRSGFIPKNIANTRKDCD--PVQLPEILLYVEESVCSCASLGFVGTAGSTIAGSIETMRKNNVCQL

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
991	16		83		0.994512
1155	14		85		0.993533
1158		85		14	0.993533
1165	14		85		0.993533
1166		14		85	0.993533
1167	14	85			0.993533
1169			85	14	0.993533
1331	25		75		0.996473
1332	25	75			0.996473
1678		14		85	0.993533
1724	85	14			0.993533
1741	14	85			0.993533
1743	14		85		0.993533
1745			85	14	0.993533
1853		12		87	0.992554
1854		12		87	0.992554
1855		12	87		0.992554
1859		87	12		0.992554
1860	12	87			0.992554
1922	14		85		0.993533
1924	14		85		0.993533
1926			85	14	0.993533
1966		25		75	0.996473
1974	25	75			0.996473
1975			25	75	0.996473
1977			25	75	0.996473
1978	25			75	0.996473
1981		75	25		0.996473
1983		25	75		0.996473
1984	25			75	0.996473
1986		75	25		0.996473
1990	25			75	0.996473
1991		25		75	0.996473
1993	25			75	0.996473
1994		25		75	0.996473
1995			25	75	0.996473
2141			66	33	0.997452
2147	33			66	0.997452
2152			33	66	0.997452
2153		66		33	0.997452
2154		66	33		0.997452
2155	66	33			0.997452
2156	33	33	33		0.997753
2157		33	33	33	0.997753
2158	33		66		0.997452
2159	33			66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain