SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13855

Length: 1456 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene13855 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	50S ribosomal protein L3 [Arabidopsis thaliana]	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	50s ribosomal protein l3	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	88%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	88%
Blast2go	rRNA binding	GO:0019843	Molecular Function	88%
Blast2go	ribosome	GO:0005840	Cellular Component	88%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	88%
Blast2go	membrane	GO:0016020	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L3	IPR000597	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMM2

Fln msg:

Fln protein: MAASVALHSASAISSLAITKVYMGTSSPSQIAIPSFQRGLKAGLPLGSHRISDFWSAVILPIRDCSVPSSSTGRRGVISMVSYDAGVGVMGTKLGMMSYFEPGGKYVPVTVVGFHEGNIVTQIKTEATDGYEAVQVGYRRVRDKKLTKPEMGHLNKVGTIPMRHLQEFRLTSVDGFELNQSLKFDELFKEGDLVDVSGNSIGKGFQGGIKRYNFRRGPMSHGSKSHRQLGSIGAGTTPGRVYPGKKMPGRMGGTKAKIRKLQVVKIDSELRTVLIKGALPGKPGNLLRITPAKIVGKNIPKN*

Protein Length: 304

Fln nts: TTTTAAATGATAACTTCATGACATGATTAGCCAACCTCTCTCTGTTAATATATCGTGGTGACCTTGGCTGTTGCTCTATTGTTATCTTCATTGGAGTC_-_ATGGCAGCTTCAGTGGCACTGCACTCGGCGTCAGCGATTTCTTCACTTGCCATCACAAAAGTCTATATGGGCACCTCATCCCCATCTCAGATAGCCATTCCTTCATTTCAACGAGGTCTCAAGGCTGGATTGCCCTTAGGAAGTCACCGAATTTCAGACTTTTGGTCTGCAGTTATCCTTCCAATAAGAGATTGCAGCGTACCATCTTCATCAACAGGCCGCAGAGGAGTCATTTCAATGGTCTCATATGATGCAGGGGTTGGAGTAATGGGCACCAAGTTAGGGATGATGTCATATTTCGAGCCTGGTGGTAAGTATGTCCCTGTGACTGTGGTGGGTTTTCATGAGGGAAATATTGTTACACAGATTAAGACAGAAGCAACAGATGGGTACGAAGCTGTTCAAGTAGGTTACAGGAGAGTTAGGGATAAGAAGCTCACTAAGCCTGAGATGGGTCATCTCAATAAGGTGGGGACCATTCCTATGAGGCATTTACAGGAATTCAGGTTAACTTCTGTGGATGGATTTGAACTCAACCAAAGTTTGAAGTTCGACGAGCTGTTCAAGGAGGGAGATCTGGTGGATGTGTCTGGAAATTCTATTGGAAAAGGATTTCAGGGGGGGATCAAGAGATACAACTTTAGAAGAGGACCAATGAGTCATGGTTCCAAAAGTCATAGACAGTTAGGTTCAATTGGTGCTGGTACAACTCCAGGGCGTGTTTACCCAGGTAAAAAGATGCCTGGTAGAATGGGTGGCACAAAGGCTAAGATCCGTAAGCTACAAGTTGTCAAGATAGACAGCGAACTTCGGACAGTACTGATAAAGGGGGCACTCCCTGGAAAGCCAGGAAATCTTTTACGAATTACACCAGCAAAGATTGTGGGCAAGAATATACCAAAAAACTAA___TTGGTTTAGCTAACTGTTTCCTGAATGATGTGAAATAGGTGGAATGTTTTGTCAAGATATCGATCCCTTCATTCTCTCCTTTTGCATGAGAGCGTGCCTATAAAGTTGCTGCATAATATTTTCTTCAATGTATTTTTGTACATCTCAGTTCTCTTTACCCCCCAAGCCTTTTCTTGGTTACAGATTAATGCAATCCCATTAAGGCACCAAACATTGGGCTTGCCGCTTAAGAATTCATTTCAAACATATTTCTTAAAAACCTCTATTAGAAATACATGAGCAAGCTCGTATTGTGGGACTCCACTTCACTACTTTTTGCATGTTCCTTTGTAATGTTAAAGATGAGCAGTTGTTTTTGCAAGTTCCTTTGTAATGTTAAAGATGAGCAGTTGTTTTTCCAAGTTCCTTTGTAATGTTAAAGATGAGCAGTTGTTTAAGATAGCCGAAGG

Fln Alignment:

Contig13855___TKVYMGTSSPSQIAIPSFQRGLKAGLPLGSHRISDFWSAVILPIRDCSVPSSSTGRRGVISMVSYDAGVGVMGTKLGMMSYFEPGGKYVPVTVVGFHEGNIVTQIKTEATDGYEAVQVGYRRVRDKKLTKPEMGHLNKVGTIPMRHLQEFRLTSVDGFELNQSLKFDELFKEGDLVDVSGNSIGKGFQGGIKRYNFRRGPMSHGSKSHRQLGSIGAGTTPGRVYPGKKMPGRMGGTKAKIRKLQVVKIDSELRTVLIKGALPGKPGNLLRITPAKIVGKNIPKN
A9NMM2_______________TKAHMATSSPSQTTIPSFQQGLKAGLPLGSPRISDFWSAVILPIRDYRAPSSSTGRRGVISMVSYEAGVGVMGTKLGMMSYFEPGGKFVPVTVVGFHEGNIVTQIKTEATDGYEAVQVGYRRVRDKKLTKPEMGHLNKVGTIPMRHLQEFRLTSVDGFELSQRLTFEELFKEGDLVDVSGKSIGKGFQGGIKRHNFRRGPMSHGSKSHRQLGSIGAGTTPGRVYPGKKMPGRMGGTKTKIRKLQVVKIDSELRTVLIKGAVPGKPGNLLRITPAKIVGKNIPKN

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
277	16		83		0.994512
281	75			25	0.996473
299	25		75		0.996473
306	25		75		0.996473
327	25		75		0.996473
378	69		30		1.0
386	30	69			1.0
538	87		12		0.992554
730		12		87	0.992554
731		12		87	0.992554
732		12	87		0.992554
744	88		11		0.923564
1244		91		8	1.0
1254			8	91	1.0
1264	8		91		1.0
1266		6		93	0.99903
1270		9		90	1.0
1293	90		9		1.0
1295	90		9		1.0
1297	90	3	6		0.997952
1326		6		93	0.999453
1329		93	6		0.999364
1336			6	93	0.999364
1340		6	93		0.999364
1360	92		7		0.999664
1380	33			66	1.0
1382	66			33	1.0
1384		33		66	1.0
1385	33		66		1.0
1387		66		33	1.0
1388	66			33	1.0
1389			66	33	1.0
1391		66		33	1.0
1392	66			33	1.0
1393	66			33	1.0
1394			66	33	1.0
1397		66		33	1.0
1398	66		33		1.0
1400		33	66		1.0
1401	66			33	1.0
1403			66	33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain