SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13841

Length: 1687 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene13841

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	2-hydroxyacid dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9RDX6_RICCO	-	-	1.0e-36	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	erythronate-4-phosphate dehydrogenase family protein	-	-	0.0	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	57%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR014778	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUE2

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 264 - 324

Fln protein: MRLSSCPLENTPLLLTLCYIPRDFTVGLEVNGERIAPSETASSLLRRDRVDKQSAEVTYVSTDNIRITGAMTFEVYENDVLLVCGKLQRLNSTFEWSMDCCAGLAGSLFLGGGKTERRSWSGSAPAMEVYVAGCCSGVPVIWTNKILLVCGRKSGSGLGVDNIPEDEKSMKLCENKEQSDRLYQLSDGSYTKDQDEMGGPGFTRFYPERGNIEEDYGEQSWFNTGIGVGVGIGIGMFVGIGLGVGLLVNTYQIATKVFRRKWL*

Protein Length: 265

Fln nts: ATCAGAACATCGATCATATTTTTGGCTTTCTTGCTCTGAGTTGCAGGAAACTTGAAACGCCATACATGGAGTCTTCTGAAGAGGACATGGCGCAAAGAAAGCTTAGCGCGGAGAAGGATCCGTGTCTAGATCTGAGAGATTTTAT_-_ATGCGATTGAGCTCATGCCCACTTGAAAATACGCCTCTGCTTTTAACTCTCTGCTACATTCCCAGAGATTTTACTGTTGGACTTGAAGTGAATGGCGAACGCATTGCTCCTTCTGAGACGGCTTCTTCCCTGCTGCGAAGGGACAGAGTTGATAAGCAATCCGCAGAAGTTACTTATGTTAGTACAGATAATATTCGCATAACAGGAGCCATGACATTTGAAGTTTATGAGAATGATGTCTTGTTGGTCTGTGGAAAGCTGCAAAGATTGAATAGTACCTTCGAATGGAGCATGGATTGCTGTGCAGGATTGGCGGGCTCTCTGTTCTTGGGAGGAGGAAAGACTGAGCGGAGATCTTGGAGTGGTTCTGCCCCTGCCATGGAGGTATATGTTGCTGGTTGTTGTTCCGGGGTTCCTGTGATTTGGACTAATAAAATCCTGCTGGTTTGCGGTAGAAAGTCTGGGAGCGGCCTGGGTGTTGATAACATTCCAGAGGATGAGAAAAGCATGAAACTCTGTGAGAACAAAGAACAGAGTGATCGATTGTATCAGCTATCTGATGGCAGTTACACAAAAGACCAAGATGAAATGGGTGGACCTGGTTTTACTAGGTTTTATCCAGAAAGGGGAAACATTGAAGAAGATTATGGAGAGCAATCCTGGTTCAATACTGGAATTGGGGTTGGTGTCGGTATTGGCATTGGAATGTTTGTTGGCATTGGATTGGGCGTTGGATTGCTTGTAAATACATATCAAATAGCCACTAAAGTTTTCAGGAGAAAGTGGTTATAGATTTTTGTTGTTCGCTGTTAGTGGTAAAATTTGATTGAAATACGACTTCTGCCCGACTCAATTGTTCTCCAAGATTTTCTTATTGTATGAAGGACAGGATTAGATATATTGAGCTAACCTGTGTTCTTCTTCCAGCGAAAAGACAACCAAGCCCTTTTGAGGAAAAGCACGTAAGAGCCTGGACAGGGAGGGTTGTTGACATTCCATGGATGCAACGCTGGTGGGCGGAGAGTTTGTTGATGATGGTCCATCGCCCATGGTAGATATTTCGATAGGGCAAAAGCTCGTCGAAGTCATGAAAGTCGATGCCAGGACATCAAAACCGCAAGGCAAGAGTATCCTGATTAAGTCGATGGCAGCCACTGAGGATGTCGATAAAATCTAAGTCAGTCATTACTGGAAGTTGAATCGCCATAACTGCTTCTTGGTTGATATTAGGCATATGTAAAGGGGATCAAAACTACAAGAAGGCCCTCTGTTGGTTCAACCACTTCCACTCAGCACAATTTACTGCTCCAGTTATTGACCAGTAGCTAGTTATGATTTAGTTGTGTTGCACATCACTGGCAATGCCGACTATAACTGTTCAATGTAGGCTCAATGGCTTGGTTATGCAATGCCCTAGTTGGGTTTGTCACCCATGTAATAAGAAAGTGCAACACGTGATTACGCTTTACCTATAGGTTATTTGTGATTCGTAATTATTGTGTACATATGATAGATTAGAACATTTGGTAATCAGCCAATTGC

Fln Alignment:

Contig13841___FYMRLSSCPLENTPLLLTLCYIPRDFTVGLEVNGERIAPSETASSLLRRDRVDKQSAEVTYVSTDNIRITGAMTFEV-YENDVLLVCGKLQRLNSTFE-------WSMDCC-XXXXXXXXXXXXKTERRSWSGSAPAMEVYVAGCCSGVPVIWTNKILLVCGRKSGSGLGVDNIPEDEKSMKLCENKE-----QSDRLYQLSDGSYTKDQDEMGGPGFTRFYPERGNIEEDYGEQSWFNTXXXXXXXXXXXXXXXXXXXXXXXXNTYQIATKVFRRK
A9NUE2_______________FYVRVSSCPLEGAPQSLTLRHHHRTVGVALEINGTRIPPAESVSLTLRRDRVDKESAEATYVSTDSVRTTGTLDFEVCYDEETLLLCGALERLEQGSDHQGVKELWGMDCCSAIGPGVCPFGKLGKQQQDFSSGPPTLEVYVAGCCGGSPIILTKTVQLVSRRKPHRRGTLDVIPEDEDETEKAQIKTIVLSGHHSHSHQISEDRDYEELDGKVESSLGSFYPEGGYIEGEDGELTWFNAGVRVGVGIGLGMCLGIGIGVGLLMRTYQATTRTFRRR

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
437		28	71		1.0
444	71			28	1.0
488		66	33		1.0
578			30	70	1.0
586	50			50	1.0
621			90	10	0.90298
699		87		12	0.992554
704	12			87	0.992554
706	87		12		0.992554
708			87	12	0.992554
710	12	87			0.992554
712			87	12	0.992554
739	14		85		0.993533
1064		85	14		0.993533
1248	66	33			0.997452
1313		25	75		0.996473
1441		71		28	1.0
1446		28		71	1.0
1447	28			71	1.0
1448	28			71	1.0
1461	71	28			1.0
1477		28		71	1.0
1482	71		28		1.0
1507		71		28	1.0
1511	28		71		1.0
1513		71		28	1.0
1535		14	85		0.993533
1579		33		66	0.997452
1587	33			66	0.997452
1588	66			33	0.997452
1590	33		66		0.997452
1591	66		33		0.997452
1592	33			66	0.997452
1593			33	66	0.997452
1595			33	66	0.997452
1596		66	33		0.997452
1597	33		66		0.997452
1598	66	33			0.997452
1599		66		33	0.997452
1600	66			33	0.997452
1601		33		66	0.997452
1602			33	66	0.997452
1604			33	66	0.997452
1608	66			33	0.997452
1609		66	33		0.997452
1610			33	66	0.997452
1611		66		33	0.997452
1615	33	66			0.997452
1616		66		33	0.997452
1617		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain