SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13840

Length: 575 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene13840
CAGAAATTGGGGCACAATGGAAAACTTACTGCGCTTTATCTTGGGTCTTTTTGGAAATATTACAGCTTTTGTCTTTGTTTCTGTCACCAGTAGGAAAATCCTAATACTGCTCATAGCAGGCATGGCTCTTTTCACTGCAGTTGTTGTGATCTCATTAACAGCCCTGCATGGCAACACACGGAAACTGTTCGTGGGCTCCATTGCTGCTACATTTTCAGCTTGTGTATATGCAGCTCCTTTGTCTATAATGAGATTGGTAGTTCAGACAAAAAGTGTGGAGTACATGCCATTCTTCCTTTCCTTTTGTGGGTTCTTGTGCAGTGCATCCTGGGCTGTGTATGGGATTCTTGGCAGGGACGTATTTGTAACGACTCCAAATTGTATTGGAACATTGCTTGGTGTAGCCCAACTGATATTGTATTTCATATACAAAGATTTTAGCCCAGCTAAATGCAAAGAAGATAGCAGCAGTGGTTACTGTGTTAAACATGTCATGTCCTTGCCCCCCAGTAAGCTTGAGTTAACTTTGGACAAACATAAAAGTGCAGCAGAAAGGCTTAATGAAATGACACGGA

Ace file of the UniGene sp_v2.0_unigene13840

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nodulin MtN3-like protein [Arabidopsis thaliana] sp\|Q8L9J7.1\|SWET1_ARATH RecName: Full=Bidirectional sugar transporter SWEET1; Short=AtSWEET1 gb\|AAM65929.1\| unknown [Arabidopsis thaliana] gb\|AAO42204.1\| unknown protein [Arabidopsis thaliana] gb\|AAO63896.1	-	-	4.0e-30	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	bidirectional sugar transporter sweet1-like	-	-	2.31915e-41	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	transport	GO:0006810	Biological Process	2.31915e-41	69%
Blast2go	sugar transmembrane transporter activity	GO:0051119	Molecular Function	2.31915e-41	69%
Blast2go	integral to plasma membrane	GO:0005887	Cellular Component	2.31915e-41	69%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	2.31915e-41	69%

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	RAG1-activating protein-1-related	IPR004316	-	-
Sma3		IPR018169	-	-
Sma3		IPR018179	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQ39

Fln msg: STOP codon was not found. Distance to subject end: 6 aas, your sequence is shorter than subject: 191 - 260

Fln protein: RNWGTMENLLRFILGLFGNITAFVFVSVTSRKILILLIAGMALFTAVVVISLTALHGNTRKLFVGSIAATFSACVYAAPLSIMRLVVQTKSVEYMPFFLSFCGFLCSASWAVYGILGRDVFVTTPNCIGTLLGVAQLILYFIYKDFSPAKCKEDSSSGYCVKHVMSLPPSKLELTLDKHKSAAERLNEMTR

Protein Length: 192

Fln nts: CAGAAATTGGGGCACAATGGAAAACTTACTGCGCTTTATCTTGGGTCTTTTTGGAAATATTACAGCTTTTGTCTTTGTTTCTGTCACCAGTAGGAAAATCCTAATACTGCTCATAGCAGGCATGGCTCTTTTCACTGCAGTTGTTGTGATCTCATTAACAGCCCTGCATGGCAACACACGGAAACTGTTCGTGGGCTCCATTGCTGCTACATTTTCAGCTTGTGTATATGCAGCTCCTTTGTCTATAATGAGATTGGTAGTTCAGACAAAAAGTGTGGAGTACATGCCATTCTTCCTTTCCTTTTGTGGGTTCTTGTGCAGTGCATCCTGGGCTGTGTATGGGATTCTTGGCAGGGACGTATTTGTAACGACTCCAAATTGTATTGGAACATTGCTTGGTGTAGCCCAACTGATATTGTATTTCATATACAAAGATTTTAGCCCAGCTAAATGCAAAGAAGATAGCAGCAGTGGTTACTGTGTTAAACATGTCATGTCCTTGCCCCCCAGTAAGCTTGAGTTAACTTTGGACAAACATAAAAGTGCAGCAGAAAGGCTTAATGAAATGACACGGA

Fln Alignment:

Contig13840___KILILLIAGMALFTAVVVISLTALHGNTRKLFVGSIAATFSACVYAAPLSIMRLVVQTKSVEYMPFFLSFCGFLCSASWAVYGILGRDVFVTTPNCIGTLLGVAQLILYFIYKDFSPAKCKEDSSS
A9NQ39_______________KIFGLLVIVLKFFALVALVSLLALHGHARKLFCGFAAAIFSICMYASPLSIMRTVIKTKSVKYMPFFLSLCVFLCGTSWFIFGLLGKDPFLAVPNGVGSALGAMQLILYAVYKDWK----KKDSNT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain