SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13819

Length: 812 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene13819

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9GWX1_POPTR	-	-	63%
FL-Next	sp=F-box protein At3g54460; Arabidopsis thaliana (Mouse-ear cress).	-	-	59%
Blast2go	f-box protein at3g54460-like	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	ATP binding	GO:0005524	Molecular Function	70%
Blast2go	helicase activity	GO:0004386	Molecular Function	70%
Blast2go	DNA binding	GO:0003677	Molecular Function	70%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	70%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, CW-type	IPR011124	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M1I1

Fln msg: Distance to subject end: 509 aas, your sequence is shorter than subject: 270 - 1378

Fln protein: NRDVRRQSCSAPEENWDASRSITYLPGFYNEGTSPGQEQNIRFFTSVLKEYASSLNSETKQALTWLANLTADKLSKMETTGITLPPGLRMVSVSGQDLHGYYKIFEAFGLVQRKEGKGIARWCYPRGLDNLVFDVVALKNSLTRPVDVVRLYLSRATLIVVPANLVEHWKNQILKHIRPGQIRMFIWVDQRKPPLAHNLAWDYDIVITTFPRLSAEWSLRESSVLMRVHWLRVMLDEGHTLGSSVSLTNKLQMAISLTASCRWLLTGTPT

Protein Length: 271

Fln nts: AACAGGGACGTACGGCGCCAAAGCTGCTCAGCGCCAGAAGAGAATTGGGATGCAAGCAGGTCGATAACATACTTGCCTGGTTTTTATAACGAGGGTACTTCACCTGGACAGGAGCAGAATATACGTTTTTTTACTAGTGTGCTCAAGGAATATGCTTCATCACTTAATTCAGAGACCAAGCAAGCATTGACTTGGCTGGCAAACCTCACTGCGGACAAACTCTCAAAGATGGAAACTACGGGCATTACACTTCCTCCAGGCTTGAGGATGGTTTCAGTGTCTGGACAGGATTTACATGGATATTACAAAATATTTGAGGCATTTGGCCTTGTGCAAAGGAAGGAAGGAAAGGGGATTGCCAGGTGGTGTTATCCTCGTGGTCTAGACAATCTTGTATTTGATGTGGTAGCTTTAAAAAATTCTCTTACCAGGCCAGTTGATGTAGTCAGGCTATACCTGTCCAGAGCGACCCTTATTGTAGTACCTGCAAATCTAGTAGAGCACTGGAAAAACCAAATTTTGAAACATATCAGGCCTGGGCAAATACGAATGTTTATCTGGGTTGATCAGAGAAAACCACCTCTAGCTCACAACCTTGCGTGGGACTATGATATTGTCATTACTACTTTTCCTCGCTTGAGTGCAGAGTGGAGTCTGCGGGAAAGCAGTGTACTGATGCGGGTGCATTGGCTGCGGGTAATGTTGGATGAGGGTCATACTCTAGGTTCAAGTGTGAGCCTTACGAACAAGTTACAAATGGCAATATCTTTGACTGCCTCTTGTCGATGGTTGTTAACTGGCACACCGACGCC

Fln Alignment:

Contig13819___NRDVRRQSCSAPEENWDASRSITYLPGFYNEGTSPGQEQNIRFFTSVLKEYASSLNSETKQALTWLANLTADKLSKMETTGITLPP-GLRMVSVSGQDLHGYYKIFEAFGLVQRKEGKGIARWCYPRGLDNLVFDVVALKNSLTRPVDVVRLYLSRATLIVVPANLVEHWKNQILKHIRPGQIRMFIWVDQRKPPLAHNLAWDYDIVITTFPRLSAEWSLRESSVLMRVHWLRVMLDEGHTLGSSVSLTNKLQMAISLTASCRWLLTGTPT
Q9M1I1_______________NNDPAYQSCNDPEELWDKSQPIKYLQGFYTKGASGEESDNISFFTSVLREHKSSVSSTVKKALIWLAKLPLEKLSQMETVGLPGPVLGLKL------DALGFQRIFRAFGLKSRVE-KGVTKWFYPKFLENLVFDVPALKVALCQPLDTFRLYLSKATLIVVPTNLVNHWLTQIQKHVCSDQLRILVWADHIELS-PHSLAWDYDVVITTFSRLSAEWNPRKKSPLIQVHWLRVMLDEGHTLGSSVSLTNKFQMAVSLTACNRWLLTGTPT

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
288			33	66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
336	349	AAGG AAGG AAGG AA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain