SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13815

Length: 1209 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene13815 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial glycoprotein family protein [Arabidopsis thaliana] emb\|CAB82978.1\| putative protein [Arabidopsis thaliana] gb\|AAP88362.1\| At5g02050 [Arabidopsis thaliana] dbj\|BAE99935.1\| hypothetical protein [Arabidopsis thaliana] gb\|AED90426.1\| Mitochondri	-	-	3.0e-33	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	mitochondrial glycoprotein family protein	-	-	0.0	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	0.0	60%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitochondrial glycoprotein	IPR003428	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZK2

Fln msg:

Fln protein: MSLFYVVRRAASSVAPKAFRALKHHRFIVSATGSAFQSCCSKETIKGTPWVSSRAATSIAACAKSNENLVEMLEEEIQCALESDPPTEDPKPPGTIPWEIEDILGNQAVILRKKHGNEDIKVEVMPGDMGDEEEEDDEEDRDSDIASVEPHVYLTVTISKGEGPFLEFICTGYAKEVSIDAMAFKHPQKKASYEGDRIPYDGPDFNDLDESLQKALQKYLEVRGIKPVLTNYLSEYVINKERKENINWLKTVKEYIEK*

Protein Length: 260

Fln nts: ATGGGGGCTTAAAACGCAAATTTCTAGAGCAGGGCTATAAACGTCGTGACCTTGGCTGTCACTCCAGGGTTTTAGTTCCGGAGATATTTGTGTTTGTA_-_ATGTCTCTGTTTTATGTTGTCCGCAGGGCAGCCTCCTCTGTAGCACCAAAGGCTTTCAGAGCCTTAAAGCATCATAGGTTCATCGTTTCGGCCACTGGGTCTGCATTTCAAAGCTGTTGCAGTAAAGAAACAATCAAGGGAACACCATGGGTTTCCAGTCGCGCGGCTACTTCAATTGCCGCCTGTGCGAAATCGAACGAAAACCTAGTGGAAATGCTTGAAGAGGAGATTCAGTGTGCGCTTGAATCGGACCCTCCCACCGAGGATCCTAAACCCCCGGGCACCATTCCCTGGGAGATCGAAGACATACTGGGCAATCAGGCGGTTATTTTGCGGAAGAAACATGGTAATGAGGATATAAAAGTTGAAGTTATGCCAGGGGACATGGGTGACGAGGAAGAGGAGGACGACGAAGAAGATAGGGACAGTGATATCGCTTCTGTTGAACCCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTCGAGTTTATTTGCACTGGGTATGCCAAAGAGGTTTCAATCGATGCCATGGCCTTCAAACATCCACAGAAAAAGGCATCATATGAAGGAGATCGAATTCCGTACGATGGACCTGACTTCAACGATTTGGATGAGAGTTTACAGAAGGCCCTTCAAAAATACCTGGAAGTTCGAGGCATCAAGCCCGTTCTAACAAATTACCTGAGCGAATATGTGATAAACAAGGAGCGTAAGGAAAATATCAATTGGTTGAAAACTGTTAAGGAATATATTGAAAAGTAG___AACGTAATTGACATCTCTGTTTTGGTAACCTATTATGGTTCAGCCACAAGAAAGGATAATTGTGCATCAGTCAACAAAATTGACTGATCTTGGAGTGCAGAGGAGAATGGCAGAGGTCAGTTGCCTGCAACGGGGAAGAACACTAGTTTTTTTAGTGTTATCTTTTAATGTACTCTTCTAGACAACTCTCTAGTGCTCTGTTATAATGTTATTGCTGAGGTGGTCATTTAAAAAAATGTTATATGGGGAATGGTAGCCTACTTTGAATGTTATTTGTCACGGATGAATGTATTTTTGTGTTAGAACATATAATTGAGTAAGCACTTTGTTTTGT

Fln Alignment:

Contig13815___MSLFYVVRRAASSVAPKAFRALKHHRFIVSATGSAFQSCCSKETIKGTPWVSSRAATSIAACAKSNENLVEMLEEEIQCALESDPPTEDPKPPGTIPWEIEDILGNQAVILRKKHGNEDIKVEVMPGDMGXXXXXXXXXXXXXDIASVEPHVYLTVTISKGEGPFLEFICTGYAKEVSIDAMAFKHPQKKASYEGDRIPYDGPDFNDLDESLQKALQKYLEVRGIKPVLTNYLSEYVINKERKENINWLKTVKEYIEK
A9NZK2_______________MSLFYAVRRAASSVAPEAFRALKHHRFIHSAIGSAFQNRCRKEIIKGTPWVSSRKATSIAVYTKSNGNLLELLEDEIQCALESDPPTEDAKLPGTIDWEIEDILGNQAVMLRKKYGNEDIQVEVVPGDM--DDDDDEEEDGDSNIASVEPHVYLTVTICKGEGPFVEFICTGYDKEVSIDAMAFKHPYKNTSDEGDRIPYDGPDFNDLDENLQKAFHKYLEVRGIKPGLANYLSEYMINKERKEYINWLKTVKEYIEK

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
94	66		33		0.997452
145	80		20		0.995493
496			12	87	1.0
502		12		87	1.0
603			88	11	0.999952
606	88		11		0.999952
834		20	80		0.995493
1038	10	84	5		0.999846
1057	96		3		0.991164
1095	49	1	49		1.0
1128		93	6		0.999999
1129	6			93	0.999999
1130		93	6		0.999999
1131		93		6	0.999999
1133		6	93		0.999999
1135	93		6		0.999999
1137		9		90	1.0
1140	92		7		1.0
1141	89	2	5	2	0.971054
1142		94		5	0.998744
1144	5	94			0.998744
1145		8	2	77	1.0
1146	3	15	15	48	1.0
1147	6	15	51	27	1.0
1148	54	16	25		1.0
1152	88			11	0.999952

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain