SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13804

Length: 1543 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene13804

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00675, Peptidase_M16, Insulinase (Peptidase family M16)	-	-	3.0e-19	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	chloroplast processing enzyme	-	-	0.0	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	78%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	78%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	78%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M16, C-terminal	IPR007863	-	-
Sma3	Peptidase M16, core	IPR011237	-	-
Sma3	Peptidase M16, N-terminal	IPR011765	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQM8

Fln msg:

Fln protein: MRSYRMIATQRGFDRGVFSPRSVTGIELGVMSLAAYSIKDRDVWKADKNHCLA*

Protein Length: 55

Fln nts: ATGGGAAAACAAAACAAAATTATCAGAATGCGAGCGACTGGTTCTGAATAGAAGGAATCAGGGGAAGGAGGAAAGCAAAGCGAGGGTTTCGCTTGCTCGCGCTCTCTCTCGCGAGGGTTCAGTCATTTCTGGCGGGAGGCATAAATGGCCACAACGGTCATCTCGACTCCACCTCTATGTCCGTTGA_-_ATGCGAAGCTACAGGATGATCGCTACGCAGCGGGGATTCGATCGCGGGGTCTTCAGCCCTCGCTCTGTTACAGGAATCGAGTTAGGAGTGATGTCGCTGGCCGCATATTCCATCAAAGATCGAGATGTCTGGAAGGCAGACAAAAATCACTGTCTCGCATGA___CCTTCAGTGCAGACAGTAAGAAATCTAGGCAATTCTTCTCGGAGTTGAGTGCTGTGTCTGGTTTACATGAGTCACAGGAATATCTAGCATGCACCAGAAGACGGAGTTCTAATCAACTGGTTCTTCAGAGGAAAGCTTTTATGGGCCTTTCTTCTCAACAACAATCTTTATTTACAAATTCTAATTTTCTCCTTTGGCGGAGGCCACAGAAACTATCTGATTTTCATGGTCTTTTGAAACACTCAGCTATAGCACCTTTGGCAACAATAGGGCCAGATGAGCCACATGTGGCAAGCACAGCATGGCCTGAGGATGGCTTACTAGAGAAACAAGGACTAGGAGTATGGGAGCATGAAATTAAAGGTACTGATATGGAAGGATTCTTAAGTTCCAGGATTCCATCTCATCCTAAGCTGTATCGTGGACAACTTAAGAATGGACTACGCTATGTGATTCTCCCCAACAAAGTTCCTCCTAATAGATTTGAGGCTCACATGGAAATTCATGTTGGATCTGTCGATGAGGATGAAGATGAGCAGGGCATTGCCCATATGATTGAGCATGTTGCTTTCCTTGGAAGTAAGAAGCGTGAGAAACTTCTTGGTACAGGAGCTCGGTCTAATGCATACACAGATTTTCATCATACTGTGTTTCATGTCCATTCTCCTTTCATGAGCAAGGATTCAGATGGACCTTTGTTGCCATTTGTACTGGATGCCTTACATGAAATCGCTTTCCAGCCTAAATTTCTTTCATCACGGGTTGAGAAAGAGAGGCGGGCTGTTCTTTCAGAGCTTCAAATGATGAACACTATAGAATACAGGGTTGATTGCCAGTTGCTGCAACAACTACATTCAGAAAACAAACTGGGTAGAGGATTTCCGATTGGATTGGAGGAGCAGATTAAAAAATGGGATGTGGAGGCAATTAAAAACTTTCATGAGCGTTGGTACTTCCCTGCTAATGCAACACTATATATTGTGGGAGATATAGATAGTGTTCCAAAGACAGTGTATCACATAGATGCTGTGTTTGGGCGAACTCCTTCTGGAGGTGAATTCTCTGTTGCACATCCTCCAAATGCATTTGGTACTATGGCCAACTTTCTTGCACCCAAGCTACCAACTGCATTAGCTGGTGCTGTTATTGGTGAAACACCATCTTCTTTAGTAGTACAACAATCAAAACAGTTAA

Fln Alignment:

Contig13804___MRSYRMIATQRGFDRGVFSPRSVTGIELGVMSLAAYSIKDRDVWKADKNHCL
A9NQM8_______________MRSYRMIAMPRGFDRGIFSPRSVTGIELRVTLPAAYSIEDRDIWKADENHSL

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
570	80			20	0.995493
571		20		80	0.995493
572	20			80	0.995493
573		20		80	0.995493
788		40	60		1.0
1228	50		50		1.0
1324		75		25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain