SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13750

Length: 651 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene13750

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SAP domain-containing protein [Arabidopsis thaliana] gb\|AAT41750.1\| At5g63460 [Arabidopsis thaliana] dbj\|BAD44475.1\| unknown protein [Arabidopsis thaliana] dbj\|BAD44602.1\| unknown protein [Arabidopsis thaliana] gb\|AAU84684.1\| At5g63460 [Arabidopsis thalia	-	-	4.0e-26	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	sap domain-containing protein	-	-	2.83062e-43	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	2.83062e-43	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	DNA-binding SAP	IPR003034	-	0.0	-
Sma3	Ubiquitin ligase, Det1/DDB1-complexing	IPR018276	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
183		33		66	0.997452
362		85		14	0.993533
367		85	14		0.993533
368		85		14	0.993533
369		85		14	0.993533
370		85	14		0.993533
444	90	10			0.90298
446	90		10		0.90298
447	10	90			0.90298
451	85			14	0.993533
452	85		14		0.993533
453	85		14		0.993533
457	85			14	0.993533
459			85	14	0.993533
460		14	85		0.993533
463	85			14	0.993533
464	85	14			0.993533
465	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain