SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13717

Length: 374 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene13717
GTGAAGAACGTGGAATAAGAAGGGAATTCTCTACAACTAGGACTCCTCAGCAAAATGGAGTAGTGGAAAGGATGAGCAGAACGGTTAACAAATGGCTTGTGCTATGCTTGATGAGTCTGGAACTCCCGCAACCTTCTGGGGCGAAGTTGCTTTTGCTGCGGTTGTTATTCTCAACAAGACAAATGTCCGGGTGAACAGCACTCAAACTCCTCATGAGCTTTGGTATGGTGAGACTCCTTTGGTAAAACATTTCAAAATTTTTGGAAGCAAATGCTATATTACGAATAATGATGAACATCTTGACAAGTTTGAACCTTGAGTAGATGAAGACATCCTTCTTGGTTATTCTCCCCACAGCAAAGCATATATACATT

Ace file of the UniGene sp_v2.0_unigene13717 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag/pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9C5V1_ARATH	-	-	1.0e-20	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	retrotransposon unclassified	-	-	1.19984e-20	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	1.19984e-20	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 66 aas, your sequence is shorter than subject: 64 - 407

Fln protein: EERGIRREFSTTRTPQQNGVVERMSRTVNKWLVLCLMSLELPQPSGAKLLLLRLLFSTRQMSG*

Protein Length: 65

Fln nts: GTGAAGAACGTGGAATAAGAAGGGAATTCTCTACAACTAGGACTCCTCAGCAAAATGGAGTAGTGGAAAGGATGAGCAGAACGGTTAACAAATGGCTTGTGCTATGCTTGATGAGTCTGGAACTCCCGCAACCTTCTGGGGCGAAGTTGCTTTTGCTGCGGTTGTTATTCTCAACAAGACAAATGTCCGGGTGAACAGCACTCAAACTCCTCATGAGCTTTGGTATGGTGAGACTCCTTTGGTAAAACATTTCAAAATTTTTGGAAGCAAATGCTATATTACGAATAATGATGAACATCTTGACAAGTTTGAACCTTGAGTAGATGAAGACATCCTTCTTGGTTATTCTCCCCACAGCAAAGCATATATACATT

Fln Alignment:

Contig13717___GIRREFSTTRTPQQNGVVERMSRTV
B8LKX7_______________GIKREHTVPYTPQQNGVAERKNRTL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
135	33		66		0.997452
136	66			33	0.997452
145		66		33	0.997452
155	66		33		0.997452
177		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain