SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13701

Length: 1146 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene13701

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative ABA-responsive protein [Oryza sativa Japonica Group] gb\|AAP54375.1\| GRAM domain containing protein, expressed [Oryza sativa Japonica Group] gb\|AAR87359.1\| putative GRAM domain protein [Oryza sativa Japonica Group] gb\|EAY79003.1\| hypothetical prot	-	-	1.0e-34	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	gem-like protein 4-like	-	-	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	GRAM	IPR004182	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNC7

Fln msg: your sequence is longer than subject: 235 - 196

Fln protein: MGFTERPSSIPRTRSLEIHEKRGDHHTDDAHHRNKKQHERPLPVGVPGKPPGEARPSDEDRPLMSPYGMCPMINFGGRAEDLAEHFKLSKSVSDTLKGKLILGAEIVTKGGVDNLFKELFSVEPEEKLLKSFACYLCTTTVPVAGVIFISTQKIAFCSERRLAFSSPSGGLARSYYRVVIQVKEASSVYSCENSEKHSEKYIKIHTVDKGEFWFMGFINFNKALKYMKTAVESA*

Protein Length: 236

Fln nts: ATGGGGGCCAAGGTCTGTTACAGATTAATATAAGTGTAAATCCCCTCTCCACAGGGACGTTGTAATTGATTTCTATTTCTTTGCCTGACATAGTAGGAGAAATATACAATTTCGAGATTATTTTTTGTAGAATTTTCAGAAGGAAAGAGCAGAATCAAGGGG_-_ATGGGATTTACAGAAAGGCCTTCTTCAATTCCTCGCACTAGATCACTTGAAATTCATGAAAAAAGAGGTGATCACCATACAGATGATGCCCATCACAGAAACAAGAAGCAACATGAACGTCCTCTTCCTGTTGGAGTCCCCGGCAAACCTCCCGGGGAGGCACGCCCTAGTGATGAGGACAGGCCTCTCATGAGCCCCTATGGAATGTGTCCAATGATTAATTTCGGCGGAAGGGCTGAAGATTTGGCCGAACACTTCAAACTTAGCAAGAGTGTGTCTGATACACTGAAGGGAAAGCTGATTTTGGGCGCCGAAATAGTTACAAAAGGTGGGGTGGACAATTTGTTCAAGGAGCTCTTCAGTGTTGAGCCAGAAGAGAAGCTCCTGAAATCCTTTGCCTGTTATTTGTGTACCACTACTGTACCTGTGGCCGGTGTAATCTTTATATCAACTCAGAAAATTGCCTTCTGTAGTGAACGTCGACTGGCTTTCAGTTCTCCTTCTGGAGGATTGGCTAGGAGTTATTACCGGGTTGTCATACAAGTAAAAGAGGCGAGTTCAGTATATTCATGTGAGAATTCTGAAAAGCATTCAGAGAAATATATAAAGATCCACACTGTAGATAAGGGTGAGTTTTGGTTCATGGGCTTTATCAACTTCAACAAAGCTCTCAAATATATGAAGACAGCTGTGGAATCTGCTTAG___CATGAAAGAGGTTGTGGAGTCTGGTTAACAATTGGACCATCCTGGTATCAGTTGGAAGGTATCAAAGAGTTAAGAGTTCTGGGAGGAAAGATGGTTTGTTCAAGTTCAATATATTTGTTTGATTATCATAACAGTTATGTACATTTGAATTAAAAAACACCTATATATATTCCAGAAGAGTGTACTTGGTAGACCCATCTTTAGTAGAGATGGGTGGGCCATGTCTATAGTATCTTGTGGTCCAAATAATTTTGGTACCAAGTTTGTTTTGAAAGTCCG

Fln Alignment:

Contig13701___MGFTERPSSIPRTRSLEIHEKRGDHHTDDAHHRNKKQHERXXXXXXXXXXXXEARPSDEDRPLMSPYGMCPMINFGGRAEDLAEHFKLSKSVSDTLKGKLILGAEIVTKGGVDNLFKELFSVEPEEKLLKSFACYLCTTTVPVAGVIFISTQKIAFCSERRLAFSSPSGGLARSYYRVVIQVKEASSVYSCENSEKHSE
A9NNC7_______________MGYPENPSSSPGTRSVE---ERGDHHTDDHHHRNKRHHKRPLPVGVPGKPPGEARPSDDHKLPTNPSGICPMIKFSERAEDLAEHFKLSKSVSDTLKGKLILGAEIVTKGGVDNLFRQLFVVDPEEKLLKSFACYLSTTIEPVAGVIFISTQKFAFCSERRLAFTSPPGGLSRSYYRVVILVKEVRSVNSCENSEKHSE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
711	50	50			1.0
836	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain