SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13665

Length: 1398 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene13665 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxidase-like protein (Fragment) n=14 Tax=Picea sitchensis RepID=E0Z9M2_PICSI	-	-	78%
FL-Next	sp=Peroxidase 12; Arabidopsis thaliana (Mouse-ear cress).	-	-	49%
Blast2go	peroxidase-like protein	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	0.0	82%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine metabolism	00360	82%
Blast2go	Methane metabolism	00680	82%
Blast2go	Phenylpropanoid biosynthesis	00940	82%
Blast2go	Biosynthesis of phenylpropanoids	01061	82%
Blast2go	Metabolic pathways	01100	82%
Blast2go	Biosynthesis of secondary metabolites	01110	82%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	82%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	82%
Blast2go	heme binding	GO:0020037	Molecular Function	82%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	82%

Source	InterPros	Term	Type	Identity
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Peroxidase, active site	IPR019794	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q96520

Fln msg:

Fln protein: MTKYVAVSSIVCFFLFVSACIISANGLVVHEHDLSKPVHGLSWSFYKDSCPDLEGIVKSVLEPALDEDITQAAGLLRLHFHDCFVQGCDGSVLLTGTKRNPSEQQAQPNLSLRARALQLIDEIKTAVEASCSGVVSCADILALAARDSVAQAGGPKFPVPLGRRDSLKFASQSVVLANIPKPTSNLKELMKNFSSKGLSLADMVALSGGHTIGIGHCNSFDNRLYDKTTGKKIVDPSIANSLADDLYSLCPTVNNTVHFTNLDVQTPNAFDKKYYENVQKNQALFTSDQSLYTESDSAEIVDSFASSQTVFFKKFVHGMHKMGQLDVLTGKKGEIRTTCSVPNPTSSAFEEDIESVTHSEL*

Protein Length: 363

Fln nts: ATGGGGGAGGCAGGGGGCAGATGGCAGGGCAGCTAGGCAGCCTGCGACTTAGGCATTCACTGTCTATGATCCTGTAGTTTCGTTTTACAATAATCACAGGTTTTGAATCTCAGAATAGTTGCGAAAGGAAGCG_-_ATGACGAAGTACGTGGCTGTTAGCTCCATTGTGTGTTTCTTTCTATTTGTTTCTGCGTGCATAATTTCTGCCAATGGATTAGTTGTCCATGAACACGATCTGTCAAAGCCTGTGCATGGGCTTTCGTGGTCATTTTACAAGGATAGTTGCCCCGACTTGGAGGGCATAGTGAAATCGGTACTTGAGCCGGCGTTGGACGAAGATATCACTCAGGCCGCAGGCTTGCTGAGACTTCATTTCCATGACTGTTTTGTGCAGGGTTGCGATGGGTCTGTGTTGCTGACAGGAACTAAAAGAAACCCCAGTGAGCAACAGGCTCAGCCAAACTTATCACTGAGAGCCCGGGCCTTGCAGCTGATCGACGAAATTAAAACAGCTGTAGAAGCTAGCTGCAGTGGGGTTGTAAGTTGTGCAGACATTCTGGCTTTGGCTGCTCGTGACTCCGTCGCCCAGGCTGGAGGCCCAAAATTTCCAGTACCACTTGGACGCAGAGATAGCCTAAAGTTCGCCAGTCAATCCGTAGTTCTCGCCAATATACCAAAACCAACTTCAAATTTGAAAGAGCTGATGAAAAATTTTAGCTCCAAAGGACTCAGTTTGGCCGATATGGTTGCTCTTTCAGGTGGACACACAATTGGCATTGGTCACTGTAACTCATTCGATAACCGATTATATGACAAGACCACAGGGAAAAAAATTGTGGATCCAAGTATAGCAAACAGTTTGGCAGACGATCTTTATTCATTATGCCCCACTGTTAACAACACCGTGCACTTCACAAACTTGGATGTCCAGACTCCGAACGCTTTCGACAAGAAATACTACGAGAATGTGCAGAAGAACCAGGCGCTATTCACCTCCGACCAGAGTCTCTACACCGAGTCCGATAGTGCAGAAATCGTTGACAGCTTTGCATCCAGCCAGACCGTGTTCTTCAAAAAGTTTGTACATGGAATGCATAAAATGGGGCAGTTGGACGTTCTAACGGGCAAGAAGGGAGAGATCCGTACCACATGCTCCGTTCCGAATCCGACTTCTTCAGCCTTTGAAGAAGATATCGAGTCCGTCACCCACTCAGAGCTTTAG___CTTGTAGTTTAAACTTAGGAATAAGGTTAATGATGTTATGTCTTTCCCTTTCTTAGTGTAAGATCGGCCACACTTCACTGGATTGCAGATTTGCTCCCAGTTATAATGTTTATGTTATTTCGACCTGACAAAATACAAATATATAAGCATTTGTAAATAAAATTTTCAAAATTCTAGTT

Fln Alignment:

Contig13665___VHGLSWSFYKDSCPDLEGIVKSVLEPALDEDITQAAGLLRLHFHDCFVQGCDGSVLLTGTKRNPSEQQAQPNLSLRARALQLIDEIKTAVEASCSGVVSCADILALAARDSVAQAGGPKFPVPLGRRDSLKFASQSVVLANIPKPTSNLKELMKNFSSKGLSLADMVALSGGHTIGIGHCNSFDNRLYDKTTGKKIVDPSIANSLADDLYSLCPTVNNTVHFTNLDVQTPNAFDKKYYENVQKNQALFTSDQSLYTESDSAEIVDSFASSQTVFFKKFVHGMHKMGQLDVLTGKKGEIRTTCSVPNPTS--SAFEEDIE
Q96520_______________VKGLSWNFYQKACPKVENIIRKELKKVFKRDIGLAAAILRIHFHDCFVQGCEASVLLAGSASGPGEQSSIPNLTLRQQAFVVINNLRALVQKKCGQVVSCSDILALAARDSVVLSGGPDYAVPLGRRDSLAFASQETTLNNLPPPFFNASQLIADFANRNLNITDLVALSGGHTIGIAHCPSFTDRLYPNQ------DPTMNQFFANSLKRTCPTANSSNTQVN-DIRSPDVFDNKYYVDLMNRQGLFTSDQDLFVDKRTRGIVESFAIDQQLFFDYFTVAMIKMGQMSVLTGTQGEIRSNCSARNTQSFMSVLEEGIE

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
89	80		20		0.995493
165	16			83	0.994512
323	88	11			0.999937
325	11			88	0.999937
548		8		91	0.999766
550	8		91		0.999766
745	83			16	0.999991
750			16	83	0.999991
755	16			83	0.999991
757		16	83		0.999991
762		75	16	8	0.99999
763			16	83	0.999991
765		18		81	0.999994
767		18	81		0.999994
770			18	81	0.999994
1076		92		8	0.999718
1115	9		90		0.999842
1258			4	95	0.996252
1300	10	70	10	10	0.922578
1301	10		20	70	0.999998
1303	20			80	0.999996
1304		10	60	10	0.999999
1305	60	10			1.0
1307		10	20	50	0.999999
1310	25			75	0.996473
1311	25			75	0.996473
1314	75	25			0.996473
1315	75			25	0.996473
1316	75		25		0.996473
1317	75		25		0.996473
1318		75		25	0.996473
1321	75	25			0.996473
1322	75		25		0.996473
1323		75		25	0.996473
1328	50		50		1.0
1330	33		33	33	0.997753
1331	33			66	0.997452
1332			33	66	0.997452
1333	33	33	33		0.997753
1334	33			66	0.997452
1337	66			33	0.997452
1339		33	66		0.997452
1340	33	66			0.997452
1341		66		33	0.997452
1342	33	66			0.997452
1343	33		33	33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain