SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13531

Length: 485 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene13531
GGAGCATGGAGCGAACGTGAACAGCAGAGATCTAGAGGGAAGAGTTCCGCTGTGGGAAGCGATACGCGGAGGAACGATGGTATTGCTCAAGTTCTATGGGATAAAGGGGCACTTCTGAACAATGGAGATGAGGGCAGATTTCTGTGCATGGCTGCACAAAGATCAGATATTCAATCATTACTGGCTTTGTTAAAATATGGTGCAGATATAAATGCTCCTAATAAATATGGCGTAACTGCTCTCCATGCAGCAATCTCAGAAAATCGTTTAGAAGTTGTGAATTTCTTAGTGCAGAAAGGAGCAGATATGGACAAAGGTGTGGGAGAGGACTGTTATAAGCAGAAGAGTTCATGAGAAATCATGTTAATTCACAAGAATCCATCAGGGAAAATGAATTCAGCGTTAAGGAAATATCAAATTCTACTCTAATCCATAGCAATTTGTACTTCTTTCACCTTAGTTTCATGAGATGGCAGTATATTTAG

Ace file of the UniGene sp_v2.0_unigene13531 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Shaker-like potassium channel 1 n=1 Tax=Populus euphratica RepID=D2KPG5_POPEU	-	-	1.0e-18	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	potassium channel	-	-	2.3576e-18	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	transport	GO:0006810	Biological Process	2.3576e-18	65%
Blast2go	voltage-gated potassium channel activity	GO:0005249	Molecular Function	2.3576e-18	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P2Q0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 59 aas, your sequence is shorter than subject: 118 - 260

Fln protein: GAWSEREQQRSRGKSSAVGSDTRRNDGIAQVLWDKGALLNNGDEGRFLCMAAQRSDIQSLLALLKYGADINAPNKYGVTALHAAISENRLEVVNFLVQKGADMDKGVGEDCYKQKSS*

Protein Length: 119

Fln nts: GGAGCATGGAGCGAACGTGAACAGCAGAGATCTAGAGGGAAGAGTTCCGCTGTGGGAAGCGATACGCGGAGGAACGATGGTATTGCTCAAGTTCTATGGGATAAAGGGGCACTTCTGAACAATGGAGATGAGGGCAGATTTCTGTGCATGGCTGCACAAAGATCAGATATTCAATCATTACTGGCTTTGTTAAAATATGGTGCAGATATAAATGCTCCTAATAAATATGGCGTAACTGCTCTCCATGCAGCAATCTCAGAAAATCGTTTAGAAGTTGTGAATTTCTTAGTGCAGAAAGGAGCAGATATGGACAAAGGTGTGGGAGAGGACTGTTATAAGCAGAAGAGTTCATGAGAAATCATGTTAATTCACAAGAATCCATCAGGGAAAATGAATTCAGCGTTAAGGAAATATCAAATTCTACTCTAATCCATAGCAATTTGTACTTCTTTCACCTTAGTTTCATGAGATGGCAGTATATTTAG

Fln Alignment:

Contig13531___DEGRFLCMAAQRSDIQSLLALLKYGADINAPNKYGVTALHAAISENRLEVVNFLVQKGADM
A9P2Q0_______________DDMAAIHFASQKGHLEIVRILLRSGASVNACTRKGMSALHYAVQGSHLEVVKFLIRKGASL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain