SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13478

Length: 593 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene13478

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MDR-like ABC transporter n=1 Tax=Taxus cuspidata RepID=E6Y0T0_TAXCU	-	-	75%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	83%
Blast2go	multidrug pheromone mdr abc transporter family	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	0.0	83%
Blast2go	Phosphate-transporting ATPase.	EC:3.6.3.27	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	gravitropism	GO:0009630	Biological Process	83%
Blast2go	root hair elongation	GO:0048767	Biological Process	83%
Blast2go	basipetal auxin transport	GO:0010540	Biological Process	83%
Blast2go	auxin efflux	GO:0010315	Biological Process	83%
Blast2go	transmembrane transport	GO:0055085	Biological Process	83%
Blast2go	ATP catabolic process	GO:0006200	Biological Process	83%
Blast2go	response to cytokinin stimulus	GO:0009735	Biological Process	83%
Blast2go	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	phosphate ion transmembrane-transporting ATPase activity	GO:0015415	Molecular Function	83%
Blast2go	integral to membrane	GO:0016021	Cellular Component	83%
Blast2go	plasma membrane	GO:0005886	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3		IPR013596	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
241	80		20		0.995493
242			20	80	0.995493
507	33		66		0.997452
508		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain