SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13415

Length: 532 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene13415
TGCACCGATCAAGAATTCAAGAATGGCAAGTGGGTCGAAGGATTTTCGTGTTTTCTCACAACGACCGTGATGGGTTTTGTTTTATGCATGAAATGTGGTATTCCTCTTCTTCATCCAACAAGAGGCCCAAGAAGAGAGTCTATCACAGGGAACACCAACTGGACCATGCGATTGAGCTTCAGAAGAAACCCCAGTTGGTGCTGCAGCTCAAGGAAATCCTTCTCAGGCAAAAAGGTGAGTCCATGCTCCTCAGAGACCTAGAAAAGGAAGTGGGTTTAATAAAAAAATGGAATTTCATGGCCACCATTGAGAGATACCCCAGGATTTTCAAGGTCAGTGGGGGACATAGGAGGCCCCCTGTCTTAGAACTCACAGATGAAGCTAAATTTATATTGAAAGATGAAGTTATAGTTAGAGAGCAGATGGAGCGAATTGCTGTCAATAACCTCAGAAAATTGCTTATGATGTCTGTTGATAGAAGGATTGCATTATTTAAGATAGAGCAGATTAAACAAGAGATCGGTTTGCCAGA

Ace file of the UniGene sp_v2.0_unigene13415 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin carboxyl-terminal hydrolase-like protein [Arabidopsis thaliana] gb\|AAC17048.1\| Contains similarity to membrane associated salt-inducible protein gb\|AF007269 from A. thaliana [Arabidopsis thaliana] gb\|AAV63862.1\| hypothetical protein At1g79120 [A	-	-	2.0e-32	54%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	60%
Blast2go	ubiquitin carboxyl-terminal hydrolase-like protein	-	-	8.82258e-42	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5AHL3

Fln msg: Distance to subject end: 166 aas, your sequence is shorter than subject: 176 - 374

Fln protein: HRSRIQEWQVGRRIFVFSHNDRDGFCFMHEMWYSSSSSNKRPKKRVYHREHQLDHAIELQKKPQLVLQLKEILLRQKGESMLLRDLEKEVGLIKKWNFMATIERYPRIFKVSGGHRRPPVLELTDEAKFILKDEVIVREQMERIAVNNLRKLLMMSVDRRIALFKIEQIKQEIGLP

Protein Length: 177

Fln nts: TGCACCGATCAAGAATTCAAGAATGGCAAGTGGGTCGAAGGATTTTCGTGTTTTCTCACAACGACCGTGATGGGTTTTGTTTTATGCATGAAATGTGGTATTCCTCTTCTTCATCCAACAAGAGGCCCAAGAAGAGAGTCTATCACAGGGAACACCAACTGGACCATGCGATTGAGCTTCAGAAGAAACCCCAGTTGGTGCTGCAGCTCAAGGAAATCCTTCTCAGGCAAAAAGGTGAGTCCATGCTCCTCAGAGACCTAGAAAAGGAAGTGGGTTTAATAAAAAAATGGAATTTCATGGCCACCATTGAGAGATACCCCAGGATTTTCAAGGTCAGTGGGGGACATAGGAGGCCCCCTGTCTTAGAACTCACAGATGAAGCTAAATTTATATTGAAAGATGAAGTTATAGTTAGAGAGCAGATGGAGCGAATTGCTGTCAATAACCTCAGAAAATTGCTTATGATGTCTGTTGATAGAAGGATTGCATTATTTAAGATAGAGCAGATTAAACAAGAGATCGGTTTGCCAGA

Fln Alignment:

Contig13415___KRPKKRVYHREHQLDHAIEXXXXXXXXXXXKEILLRQKGESMLLRDLEKEVGLIKKWNFMATIERYPRIFKVSGGHRRPPVLELTDEAKFILKDEVIVREQMERIAVNNLRKLLMMSVDRRIALFKIEQIKQEIGLP
A5AHL3_______________RRPKKKIYHRVHELDRVMDLKKKPCLILQLKSIIQSQKHQSLLLRDLEKQVGFVHKWNFMAVIEKYPSIFRVNGGNRTPPSVELTEKAKRIADEETEARKQMEPILVENLRKLLMMSVDCRVPLENIEFIESELGLP

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
387		20	80		0.995493
388		20		80	0.995493
389		20	80		0.995493
392	80		20		0.995493
393			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain