SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13346

Length: 640 nt

Origin of reads: Biogeco1 v2 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene13346 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb\|AED90947.1\| transducin/WD40 domain-containing protein [Arabidopsis thaliana]	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	25%
Blast2go	protein	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	embryo sac development	GO:0009553	Biological Process	84%
Blast2go	pollen development	GO:0009555	Biological Process	84%
Blast2go	positive regulation of cytokinesis	GO:0032467	Biological Process	84%
Blast2go	cell plate assembly	GO:0000919	Biological Process	84%
Blast2go	regulation of mitotic spindle organization	GO:0060236	Biological Process	84%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	84%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	84%
Blast2go	kinetochore microtubule	GO:0005828	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Snf7	IPR005024	-	-
Sma3	Immunoglobulin-like	IPR007110	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
454	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain