SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13344

Length: 1952 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene13344
ATGGGGGTCTACTTTGGAAGTTAATGGAACTCGATGTTCCGTCATTTCTACTCTGTCACGAGAGGTAGGCAGGCAGCGTTTTGTTTCACATAGATATAAACTCATTGCCGACTGGATTGTCCGGAAGAGATGGAGCTCCTTATCAAATCTTCCTCATTCTTTAGGCCGACGACGTTCCTGGTCGCCTCTCGGGCATCTCGGGTTCCAATCCCGCAGAGGGCAAGGGCAAGGTTTGTGACGCTTGCAGCGGATAAAACTCCTGGAAGCGATGATTCCGTCACCAAATATGGGAGTGTCCGCGTCCGCTTTGCCCCTTCACCTACCGGAAATCTTCACGTCGGAGGTGCCAGGACTGCCCTCTTCAACTATTTATTTGCCAGGTCCACAGGGGGTAAGTTTATTCTTCGCATTGAAGACACTGACCTGGAAAGATCTACTAAAGAATCAGAGGAAGTAGTGTTACGAGACCTAGCTTGGCTTGGTTTATCCTGGGATGAAGGCCCAGACAAAGGTGGTAGTTTTGGTCCATATCGCCAATCAGAGCGGACTACATTATACAAAGAATATGCAGAGAAGTTGCTGAATTCTGGCCATGCTTATAGGTGCTTCTGTTCTAATGAGGAGCTAGATAAAATGAGGGAGGAGGCTAAGTTGAAGCAGTTGCCACCAGTGTATACTGGCAAGTGGGTTTCAGCTACAGATGCAGAAATTCAAGAAGAATTGCTTAAAGGGACACCATTTACATACCGTTTTAGAGTACCTAAAGAAGGAACACTGAAAATTAATGATCTCATCCGTGGTGAAGTTTCATGGGGGTTGGACACACTTGGTGATTTTGTGATCATGAGGAGCAATGGGCAGCCTGTGTACAATTTTTGTGTTGCAGTTGATAGATGCTTCCATGGGAATCTCTCATGTTATAAGGGCAGAGGAACATTTGCCAAACACATTACGGCAGGCTTTAATCTACAAAGCATTGGGGTTTTCTATGCCTTCTTTTGCACACGTGTCTCTGATCCTTGCCCCAGATCGCAGCAAACTATCAAAGCGGCATGGTGCAACGTCAGTGGGACAGTTCAGGGAGATGGGGTTTTACCATCGGCAATGGTGAACTATTTAGCTCTCTTGGGATGGAATGACGGAACAGAAGAAGAATATTTTACCATGGAACAATTGTTCAACAAATTTTCAATTGATCGAATTACAAAAAGTGCCGCTATCTTTGATATTGTGAAATTGCGGTGGATGAATGGGCAACATTTGAGGGCCCTTCCAGCTGATAAATTGACAAAGATGTTAGGAGAACATTGGAAAGATAATGGCATTCTTTCTGAATCTGAAGGTCCATTTGTAAATGAATTGGCCGAACTTTTAAAGGATGGAATCGACTTGGTATCAGATTCAGCTCAAGAACTTGAAAATTTATTGTCGTATCCACTAAAATCTACTTTAGCAAGTCCTGAAGGAAAATCAGTTTTAAATGACAATCTTTCTGAAGTTGTAGAAGCTTTATTATCTGCTTATGACAATGGAGAGCTACAAAATGCCCTTGATAATGGGTCTTCTGGCTGGAAAAAATGGGTAAAAAGTTTTGGAAAGGCATTAAAACGGAAGGGGAAAGGTCTGTTTATGCCATTGAGAGTGCTGCTTACTGGCAAGCTTCATGGTCCTGATATGGGAACCACCATTCTTTTGCTACACAAAGCAGGCAACTCTGCAATCATTACATCGAGGGCAAATTTTATGACATTGGAAGAGCGTATACATGTGCTAAGAGAACTTGATTGTAAAAGCTTTCTAGAAGAAACTGTGGTAGATTCTAGCTCTGTTGCAGATGTGAAGGTTGTCTCTCATTAATATATTTGAAATGCTGAGATCGTGCACAAGGCTAAATAGTATGTCAAAAAGTTTTCTACAAATGTTTTTTGTAATACGTTCCTGATTCAATATAG

Ace file of the UniGene sp_v2.0_unigene13344

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamyl-tRNA synthetase 1, 2, putative n=1 Tax=Ricinus communis RepID=B9T2L7_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	glutamyl-trna synthetase	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histidine kinase.	EC:2.7.13.3	-	0.0	74%
Blast2go	Glutamate--tRNA ligase.	EC:6.1.1.17	-	0.0	74%

Source	KEGGs	Term	Identity
Blast2go	Porphyrin and chlorophyll metabolism	00860	74%
Blast2go	Aminoacyl-tRNA biosynthesis	00970	74%
Blast2go	Metabolic pathways	01100	74%
Blast2go	Biosynthesis of secondary metabolites	01110	74%

Source	GOs	Term	Type	Identity
Blast2go	glutamyl-tRNA aminoacylation	GO:0006424	Biological Process	74%
Blast2go	negative regulation of ethylene mediated signaling pathway	GO:0010105	Biological Process	74%
Blast2go	chloroplast organization	GO:0009658	Biological Process	74%
Blast2go	ovule development	GO:0048481	Biological Process	74%
Blast2go	mitochondrion organization	GO:0007005	Biological Process	74%
Blast2go	protein histidine kinase activity	GO:0004673	Molecular Function	74%
Blast2go	ethylene binding	GO:0051740	Molecular Function	74%
Blast2go	receptor activity	GO:0004872	Molecular Function	74%
Blast2go	ATP binding	GO:0005524	Molecular Function	74%
Blast2go	protein binding	GO:0005515	Molecular Function	74%
Blast2go	glutamate-tRNA ligase activity	GO:0004818	Molecular Function	74%
Blast2go	mitochondrion	GO:0005739	Cellular Component	74%
Blast2go	chloroplast	GO:0009507	Cellular Component	74%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, anticodon-binding	IPR008925	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Glutamyl-tRNA synthetase, class Ib, bacterial/mitochondrial	IPR004527	-	-
Sma3	Glutamyl/glutaminyl-tRNA synthetase, class Ib	IPR000924	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPV9

Fln msg:

Fln protein: MELLIKSSSFFRPTTFLVASRASRVPIPQRARARFVTLAADKTPGSDDSVTKYGSVRVRFAPSPTGNLHVGGARTALFNYLFARSTGGKFILRIEDTDLERSTKESEEVVLRDLAWLGLSWDEGPDKGGSFGPYRQSERTTLYKEYAEKLLNSGHAYRCFCSNEELDKMREEAKLKQLPPVYTGKWVSATDAEIQEELLKGTPFTYRFRVPKEGTLKINDLIRGEVSWGLDTLGDFVIMRSNGQPVYNFCVAVDRCFHGNLSCYKGRGTFAKHITAGFNLQSIGVFYAFFCTRVSDPCPRSQQTIKAAWCNVSGTVQGDGVLPSAMVNYLALLGWNDGTEEEYFTMEQLFNKFSIDRITKSAAIFDIVKLRWMNGQHLRALPADKLTKMLGEHWKDNGILSESEGPFVNELAELLKDGIDLVSDSAQELENLLSYPLKSTLASPEGKSVLNDNLSEVVEALLSAYDNGELQNALDNGSSGWKKWVKSFGKALKRKGKGLFMPLRVLLTGKLHGPDMGTTILLLHKAGNSAIITSRANFMTLEERIHVLRELDCKSFLEETVVDSSSVADVKVVSH*

Protein Length: 577

Fln nts: ATGGGGGTCTACTTTGGAAGTTAATGGAACTCGATGTTCCGTCATTTCTACTCTGTCACGAGAGGTAGGCAGGCAGCGTTTTGTTTCACATAGATATAAACTCATTGCCGACTGGATTGTCCGGAAGAG_-_ATGGAGCTCCTTATCAAATCTTCCTCATTCTTTAGGCCGACGACGTTCCTGGTCGCCTCTCGGGCATCTCGGGTTCCAATCCCGCAGAGGGCAAGGGCAAGGTTTGTGACGCTTGCAGCGGATAAAACTCCTGGAAGCGATGATTCCGTCACCAAATATGGGAGTGTCCGCGTCCGCTTTGCCCCTTCACCTACCGGAAATCTTCACGTCGGAGGTGCCAGGACTGCCCTCTTCAACTATTTATTTGCCAGGTCCACAGGGGGTAAGTTTATTCTTCGCATTGAAGACACTGACCTGGAAAGATCTACTAAAGAATCAGAGGAAGTAGTGTTACGAGACCTAGCTTGGCTTGGTTTATCCTGGGATGAAGGCCCAGACAAAGGTGGTAGTTTTGGTCCATATCGCCAATCAGAGCGGACTACATTATACAAAGAATATGCAGAGAAGTTGCTGAATTCTGGCCATGCTTATAGGTGCTTCTGTTCTAATGAGGAGCTAGATAAAATGAGGGAGGAGGCTAAGTTGAAGCAGTTGCCACCAGTGTATACTGGCAAGTGGGTTTCAGCTACAGATGCAGAAATTCAAGAAGAATTGCTTAAAGGGACACCATTTACATACCGTTTTAGAGTACCTAAAGAAGGAACACTGAAAATTAATGATCTCATCCGTGGTGAAGTTTCATGGGGGTTGGACACACTTGGTGATTTTGTGATCATGAGGAGCAATGGGCAGCCTGTGTACAATTTTTGTGTTGCAGTTGATAGATGCTTCCATGGGAATCTCTCATGTTATAAGGGCAGAGGAACATTTGCCAAACACATTACGGCAGGCTTTAATCTACAAAGCATTGGGGTTTTCTATGCCTTCTTTTGCACACGTGTCTCTGATCCTTGCCCCAGATCGCAGCAAACTATCAAAGCGGCATGGTGCAACGTCAGTGGGACAGTTCAGGGAGATGGGGTTTTACCATCGGCAATGGTGAACTATTTAGCTCTCTTGGGATGGAATGACGGAACAGAAGAAGAATATTTTACCATGGAACAATTGTTCAACAAATTTTCAATTGATCGAATTACAAAAAGTGCCGCTATCTTTGATATTGTGAAATTGCGGTGGATGAATGGGCAACATTTGAGGGCCCTTCCAGCTGATAAATTGACAAAGATGTTAGGAGAACATTGGAAAGATAATGGCATTCTTTCTGAATCTGAAGGTCCATTTGTAAATGAATTGGCCGAACTTTTAAAGGATGGAATCGACTTGGTATCAGATTCAGCTCAAGAACTTGAAAATTTATTGTCGTATCCACTAAAATCTACTTTAGCAAGTCCTGAAGGAAAATCAGTTTTAAATGACAATCTTTCTGAAGTTGTAGAAGCTTTATTATCTGCTTATGACAATGGAGAGCTACAAAATGCCCTTGATAATGGGTCTTCTGGCTGGAAAAAATGGGTAAAAAGTTTTGGAAAGGCATTAAAACGGAAGGGGAAAGGTCTGTTTATGCCATTGAGAGTGCTGCTTACTGGCAAGCTTCATGGTCCTGATATGGGAACCACCATTCTTTTGCTACACAAAGCAGGCAACTCTGCAATCATTACATCGAGGGCAAATTTTATGACATTGGAAGAGCGTATACATGTGCTAAGAGAACTTGATTGTAAAAGCTTTCTAGAAGAAACTGTGGTAGATTCTAGCTCTGTTGCAGATGTGAAGGTTGTCTCTCATTAA___TATATTTGAAATGCTGAGATCGTGCACAAGGCTAAATAGTATGTCAAAAAGTTTTCTACAAATGTTTTTTGTAATACGTTCCTGATTCAATATAG

Fln Alignment:

Contig13344___MELLIKSSSFFRP------TTFLVASRASRVPIPQRARARFVTLAADKTPGSDDSVTKYGSVRVRFAPSPTGNLHVGGARTALFNYLFARSTGGKFILRIEDTDLERSTKESEEVVLRDLAWLGLSWDEGPDKGGSFGPYRQSERTTLYKEYAEKLLNSGHAYRCFCSNEELDKMREEAKLKQLPPVYTGKWVSATDAEIQEELLKGTPFTYRFRVPKEGTLKINDLIRGEVSWGLDTLGDFVIMRSNGQPVYNFCVAVDRCFHGNLSCYKGRGTFAKHITAGFNLQSIGVFYAFFCTRVSDPCPRSQQTIKAAWCNVSGTVQGDGVLPSAMVNYLALLGWNDGTEEEYFTMEQLFNKFSIDRITKSAAIFDIVKLRWMNGQHLRALPADKLTKMLGEHWKDNGILSESEGPFVNELAELLKDGIDLVSDSAQELENLLSYPLKSTLASPEGKSVLNDNLSEVVEALLSAYDNGELQNALDNGSSGWKKWVKSFGKALKRKGKGLFMPLRVLLTGKLHGPDMGTTILLLHKAGNSAIITSRANFMTLEERIHVLRELDCKSFLEET
B8LPV9_______________MELLIKTSSFFRTSSFFRTTTFLVGSQASRVPIPQRSRARFVTLAANKAPGSDDSVAKSGGVRVRFAPSPTGNLHVGGARTALFNYLFARSRGGKFILRIEDTDLERSTKESEEVVLRDLAWLGLSWDEGPDKGGSFGPYRQSERNTLYKEYAERLLNSGYAYRCFCSNEELDKMKEEAKLKQLPPVYTGKWVSATDEEIQEELLKGTPFTYRFRVPKEGTLKINDLIRGEVSWRLDTLGDFVIMRSNGQPVYNFCVAVDDASMGISHVIRAEEHLPNTLRQALIYNALGFSMPSFAHVSLILAPDRSKLSKRHGATSVGQFREMGFLPEAMVNYLALLGWNDGTEEEYFTMEQLFNKFSIDRITKSAAIFDFVKLRWMNGQHLRALPADKFTKILGEHWKNSGILSESEGPFVNEVAELLKDGIDLVSDSTQALVNLFSYPLQSTLASPEGKGVLNDNLSEVVEALLSAYDNGELQNALENGSSGWQKWVKSFGKALKRKGKGLFMPLRVLLTGKLHGPDMGTTILLLNKAGNSGIITSSANFMTLEERIHVLRELDCKISLEET

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
22	66	33			0.997452
23	66			33	0.997452
26		33	33	33	0.997753
28	66	33			0.997452
31		33	66		0.997452
33	66			33	0.997452
44	33	66			0.997452
63		40	60		1.0
68		60	40		1.0
73	20		80		0.995493
92	60			40	1.0
94	80		20		0.995493
132	80	20			0.995493
188	20		80		0.995493
191	40			60	1.0
268	71		28		1.0
300	12			87	0.992554
301	14	85			0.993533
302		85		14	0.993533
304		85		14	0.993533
306	12			87	0.992554
307	12	87			0.992554
308		87		12	0.992554
394	11		88		0.923564
398	88			11	0.923564
399	88	11			0.923564
465	12			87	0.992554
466		12		87	0.992554
468		87		12	0.992554
469			87	12	0.992554
597		85	14		0.993533
704	75		25		0.996473
838	25			75	0.996473
839		25	75		0.996473
850		66		33	0.997452
1042		33		66	0.997452
1307	12			87	0.992554
1308	87	12			0.992554
1309			87	12	0.992554
1372	16		83		0.994512
1374	16	83			0.994512
1375			83	16	0.994512
1376	83			16	0.994512
1541	18		81		0.999994
1542		18	81		0.999994
1583	77	22			0.999999
1787	47		47		1.0
1855		54		45	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain