SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13292

Length: 790 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene13292 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F21M11.4 protein n=1 Tax=Arabidopsis thaliana RepID=Q9ZWC2_ARATH	-	-	3.0e-26	56%
FL-Next	sp=Protein BREAST CANCER SUSCEPTIBILITY 1 homolog; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	36%
Blast2go	protein breast cancer susceptibility 1 homolog	-	-	8.6907e-32	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA repair	GO:0006281	Biological Process	8.6907e-32	61%
Blast2go	regulation of meristem structural organization	GO:0009934	Biological Process	8.6907e-32	61%
Blast2go	leaf development	GO:0048366	Biological Process	8.6907e-32	61%
Blast2go	DNA binding	GO:0003677	Molecular Function	8.6907e-32	61%
Blast2go	intracellular	GO:0005622	Cellular Component	8.6907e-32	61%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L16	IPR000114	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
391	66	33			0.997452
392		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain