SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13245

Length: 725 nt

Origin of reads: Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene13245

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Bromodomain-containing protein n=1 Tax=Ricinus communis RepID=B9S4L0_RICCO	-	-	2.0e-35	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	bromodomain-containing protein	-	-	8.9441e-36	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone acetyltransferase.	EC:2.3.1.48	-	8.9441e-36	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	histone acetylation	GO:0016573	Biological Process	8.9441e-36	85%
Blast2go	DNA binding	GO:0003677	Molecular Function	8.9441e-36	85%
Blast2go	histone acetyltransferase activity	GO:0004402	Molecular Function	8.9441e-36	85%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	8.9441e-36	85%
Blast2go	plastid	GO:0009536	Cellular Component	8.9441e-36	85%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
329			75	25	0.996473
330	75		25		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
17	28	GGA GGA GGA GGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain