SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13238

Length: 571 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene13238
AGAACTCCGTGATCAAAAGGGAAGTTTAGTTACTGTGGGAATAGGTGGGCCTAGTGGTTCTGGTAAATCTAGCCTTTCAGCAAAGGTGAAATCTGTGTTTGGTGGCATTGTGATTTCTATGGATAATTATCGTGAAGGAGTTGATGATACCAATGACTTGGAATCGGTGGATTTCAACACTTTAGTTCAAAATCTTGAGGATTTGTTAAAGGGTCATGACATTATGATGCCACAATTTGATTTTCAACAAAAGAGACGTGTTGGTTTCAAGACAGTCAAGACCTCCCAGTCTAGCTTGGTTATAGTTGATGGTACATATGCCTTACATTCAAAACTACGCTCTTTTCTAGACATTCGAGCTTCTCTTGACATCTGGATAGCTGTTATAGGTGGAGTTCATTCACATCTTGTTGCAAGAGTACAAAGAGATATGGACAGGGTTTCTTGTCCCATTGCCCAGAATGAGATCATGACAACGGTTTTCCCAATGTTTCAACAACACATTGAGCCTCATCTTGTACATGCACATCTTAAAATTCGCAATGATTTTGATCCTGTACATTCTCCTGAG

Ace file of the UniGene sp_v2.0_unigene13238

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative uridine kinase [Oryza sativa Japonica Group] gb\|EAZ24341.1\| hypothetical protein OsJ_08094 [Oryza sativa Japonica Group]	-	-	2.0e-24	41%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	56%
Blast2go	p-loop containing nucleoside triphosphate hydrolase-like protein	-	-	0.0	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Phosphotransferases with an alcohol group as acceptor.	EC:2.7.1.-	-	0.0	71%

Source	KEGGs	Term	Identity
Blast2go	Pentose phosphate pathway	00030	71%
Blast2go	Lipopolysaccharide biosynthesis	00540	71%
Blast2go	Nicotinate and nicotinamide metabolism	00760	71%
Blast2go	Metabolic pathways	01100	71%

Source	GOs	Term	Type	Identity
Blast2go	nucleoside monophosphate biosynthetic process	GO:0009124	Biological Process	71%
Blast2go	heterocycle biosynthetic process	GO:0018130	Biological Process	71%
Blast2go	phosphorylation	GO:0016310	Biological Process	71%
Blast2go	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	71%
Blast2go	ATP binding	GO:0005524	Molecular Function	71%
Blast2go	kinase activity	GO:0016301	Molecular Function	71%

Source	InterPros	Term	Type	Identity
Sma3	Uridine kinase	IPR000764	-	-
Sma3	Zinc finger, DHHC-type, palmitoyltransferase	IPR001594	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphoribulokinase/uridine kinase	IPR006083	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8QXY6

Fln msg: Distance to subject end: 827 aas, your sequence is shorter than subject: 190 - 1066

Fln protein: ELRDQKGSLVTVGIGGPSGSGKSSLSAKVKSVFGGIVISMDNYREGVDDTNDLESVDFNTLVQNLEDLLKGHDIMMPQFDFQQKRRVGFKTVKTSQSSLVIVDGTYALHSKLRSFLDIRASLDIWIAVIGGVHSHLVARVQRDMDRVSCPIAQNEIMTTVFPMFQQHIEPHLVHAHLKIRNDFDPVHSPE

Protein Length: 191

Fln nts: AGAACTCCGTGATCAAAAGGGAAGTTTAGTTACTGTGGGAATAGGTGGGCCTAGTGGTTCTGGTAAATCTAGCCTTTCAGCAAAGGTGAAATCTGTGTTTGGTGGCATTGTGATTTCTATGGATAATTATCGTGAAGGAGTTGATGATACCAATGACTTGGAATCGGTGGATTTCAACACTTTAGTTCAAAATCTTGAGGATTTGTTAAAGGGTCATGACATTATGATGCCACAATTTGATTTTCAACAAAAGAGACGTGTTGGTTTCAAGACAGTCAAGACCTCCCAGTCTAGCTTGGTTATAGTTGATGGTACATATGCCTTACATTCAAAACTACGCTCTTTTCTAGACATTCGAGCTTCTCTTGACATCTGGATAGCTGTTATAGGTGGAGTTCATTCACATCTTGTTGCAAGAGTACAAAGAGATATGGACAGGGTTTCTTGTCCCATTGCCCAGAATGAGATCATGACAACGGTTTTCCCAATGTTTCAACAACACATTGAGCCTCATCTTGTACATGCACATCTTAAAATTCGCAATGATTTTGATCCTGTACATTCTCCTGAG

Fln Alignment:

Contig13238___ELRDQKGSLVTXXXXXXXXXXXXXXXXXXXXXFGGIVISMDNYREG---VDDTNDLESVDFNTLVQNLEDLLKGHDIMMPQFDFQQKRRVGFKTVKTSQSSLVIVDGTYALHSKLRSFLDIRASLDIWIAVIGGVHSHLVARVQRDMDRVSCPIAQNEIMTTVFPMFQQHIEPHLVHAHLKIRNDF
D8QXY6_______________ELRDKRNCSVSVGIGGPSGSGKTSLAARIASVLGGVVISMENYHDPRLPVDDSNDKDSVDFDLLIKNLEDLLKGKDITVPSFDFQQKKRTGFKPLKAPKSGVVIVDGTYALHAKLRSFLDIR------VAVVGGVHFSLLSKVRRD---IGDTFSLDHLLDSIFPMFRTHIEPDLHHAQIRISNTF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain