SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13233

Length: 526 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene13233
ATGGGGTAGCGGTGCGGCTTCGACCTCGGAACGCGGAAGAGCTTATTGCAGATGCAGATTTTGCGGACTGTGTTGAGCTGCAACCGGAGCTCAAGAGATTGAAATTGAGAAAGAACAACTGGGACTTGGAGACATTCCAGTTTGATGAGGTCTTCACGGAAACAGCTTCTCAAAAGCGTGTTTATGAAGTAGTTGCCAAACCTGTAGTTGAGAGTGTCTTGAATGGTTTCAATGGAACAGTGATGGCATATGGTCAGACGGGGACAGGGAAGACTTTTACTCTGGGTCAACTAGGTGAACACGATTCTGCTGAGCAAGGAATAATGGTTCGGGCTTTAGAGGACATTTTGGCTGATGTGGACCCTAATCATGACACTGTCACTGTTTCTTATTTCCAGTTGTATTTGGAGACTGTACAAGATCTACTTGCACCTGAAAGAGATAATATTGCAATTGTTGAGGATCCGAAACTGGTGATGTGTCTCTGGCAGGAGCCACAATGGTCCAAGTACGCGACCGTGGAGGC

Ace file of the UniGene sp_v2.0_unigene13233

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	armadillo repeat-containing kinesin-like protein 3 [Arabidopsis thaliana] sp\|Q9FZ06.1\|ARK3_ARATH RecName: Full=Armadillo repeat-containing kinesin-like protein 3; AltName: Full=Phosphatidic acid kinase gb\|AAG08965.1\|AF159052_1 kinesin-like protein [Arabid	-	-	81%
FL-Next	sp=Armadillo repeat-containing kinesin-like protein 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	81%
Blast2go	armadillo repeat-containing kinesin-like protein 3	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	91%
Blast2go	microtubule-based movement	GO:0007018	Biological Process	91%
Blast2go	recognition of pollen	GO:0048544	Biological Process	91%
Blast2go	microtubule motor activity	GO:0003777	Molecular Function	91%
Blast2go	ubiquitin protein ligase binding	GO:0031625	Molecular Function	91%
Blast2go	ATP binding	GO:0005524	Molecular Function	91%
Blast2go	transmembrane receptor protein serine/threonine kinase activity	GO:0004675	Molecular Function	91%
Blast2go	microtubule	GO:0005874	Cellular Component	91%
Blast2go	preprophase band	GO:0009574	Cellular Component	91%
Blast2go	vacuole	GO:0005773	Cellular Component	91%
Blast2go	plasma membrane	GO:0005886	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FZ06

Fln msg: Distance to subject end: 673 aas, your sequence is shorter than subject: 174 - 919

Fln protein: GVAVRLRPRNAEELIADADFADCVELQPELKRLKLRKNNWDLETFQFDEVFTETASQKRVYEVVAKPVVESVLNGFNGTVMAYGQTGTGKTFTLGQLGEHDSAEQGIMVRALEDILADVDPNHDTVTVSYFQLYLETVQDLLAPERDNIAIVEDPKLVMCLWQEPQWSKYATVE

Protein Length: 175

Fln nts: ATGGGGTAGCGGTGCGGCTTCGACCTCGGAACGCGGAAGAGCTTATTGCAGATGCAGATTTTGCGGACTGTGTTGAGCTGCAACCGGAGCTCAAGAGATTGAAATTGAGAAAGAACAACTGGGACTTGGAGACATTCCAGTTTGATGAGGTCTTCACGGAAACAGCTTCTCAAAAGCGTGTTTATGAAGTAGTTGCCAAACCTGTAGTTGAGAGTGTCTTGAATGGTTTCAATGGAACAGTGATGGCATATGGTCAGACGGGGACAGGGAAGACTTTTACTCTGGGTCAACTAGGTGAACACGATTCTGCTGAGCAAGGAATAATGGTTCGGGCTTTAGAGGACATTTTGGCTGATGTGGACCCTAATCATGACACTGTCACTGTTTCTTATTTCCAGTTGTATTTGGAGACTGTACAAGATCTACTTGCACCTGAAAGAGATAATATTGCAATTGTTGAGGATCCGAAACTGGTGATGTGTCTCTGGCAGGAGCCACAATGGTCCAAGTACGCGACCGTGGAGGC

Fln Alignment:

Contig13233___VAVRLRPRNAEELIADADFADCVELQPELKRLKLRKNNWDLETFQFDEVFTETASQKRVYEVVAKPVVESVLNGFNGTVMAYGQTGTGKTFTLGQLGEHDSAEQGIMVRALEDILADVDPNHDTVTVSYFQLYLETVQDLLAPERDNIAIVEDPK
Q9FZ06_______________VAVRLRPRNGEELIADADFADCVELQPELKRLKLRKNNWDTDTFEFDEVLTEYASQKRVYEVVAKPVVEGVLDGYNGTIMAYGQTGTGKTYTLGQLGEEDVADRGIMVRAMEDILAEVSLETDSISVSYLQLYMETVQDLLDPSNDNIAIVEDPK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
287		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain