SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13215

Length: 1266 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene13215

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cl-channel clc-7 (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HV75_POPTR	-	-	78%
FL-Next	sp=Chloride channel protein CLC-d; Arabidopsis thaliana (Mouse-ear cress).	-	-	37%
Blast2go	chloride channel protein clc-d	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	93%
Blast2go	response to metal ion	GO:0010038	Biological Process	93%
Blast2go	cellular anion homeostasis	GO:0030002	Biological Process	93%
Blast2go	chloride transport	GO:0006821	Biological Process	93%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	93%
Blast2go	voltage-gated chloride channel activity	GO:0005247	Molecular Function	93%
Blast2go	integral to membrane	GO:0016021	Cellular Component	93%
Blast2go	trans-Golgi network	GO:0005802	Cellular Component	93%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Chloride channel, voltage gated	IPR001807	-	-
Sma3	Chloride channel ClC-plant	IPR002251	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Chloride channel, core	IPR014743	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: P92943

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 553 aas, your sequence is shorter than subject: 222 - 792

Fln protein: MPLGSIMANQIRNGRFELEAVRSAWSRLPHSEDAAEDGGYHIPTRDSRGGLESLDYEVVENEPYKADxxTGLSAFFINIAVENFAGWKFAATFAIIKHSYFAGFLVYMLFNLALVFSSVFIVTHFAPAAAGSGIPEIKGYLNGIDTPGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLIGQGGSTKYHISSRWFRDFKNDRDRRDLVTCGCA

Protein Length: 223

Fln nts: GTTTGAATGCCCTTGGGTAGTATAATGTGATTGTACTAGCACCACACAAAAGCCAGTAGAACGACGGAAATGTTGGCTATAAGGTACAAACAAGACTTCAGAGCTAAGGCTTCCTGTTTGGCGGGGGTCTGATAGCGCTTAAATTACGATACTATTGTATTTTTCTATCCCGGCCTGGTTCATGATGAGGCAGAGGCCTCTCTGATGCCAATTGATCCGGGTAGTGCTTGCTTGGCCTTGACATGGCCTTCTCACACGTGGGTGTCTTTCGGTTCGGCCTCGAGTGATGTATTTTGTTCTTAAATTTTAATTTTGACATGGATTTGCTGTAAGTTCTCTGTTTTCCTTCTTTATTAATTCCATCTCCAACCCGGATGAAGGTTGGATCTGTCGTGCCCAAAAGGATTTAAAAAGACTATCTGATTCTTGATCCCGCTCGAGCGTCTAATAAATTGTTATCGTGCATATTCTACACGCTGGTGCGGATTTAGCTTCGGAATTTTACCAAGTATGACAGTTTGCCCCCTTCACGGATGCGTTCAAACGTTCGATTTTGTTTCGGGTTGCGAGGGAGTTTGGGATTCAGCATCTCGAGTTTGA_-_ATGCCCTTGGGTAGTATAATGGCCAACCAAATTCGTAACGGCCGGTTTGAACTTGAAGCAGTCCGGTCAGCATGGTCTCGTTTACCCCATTCAGAAGATGCAGCAGAAGATGGTGGATACCATATACCGACAAGGGATAGCCGTGGAGGCTTGGAAAGCCTTGATTATGAAGTGGTGGAGAACGAACCATATAAGGCAGACxxxxxxACAGGGTTGTCAGCATTTTTTATCAACATTGCTGTTGAGAATTTTGCTGGATGGAAATTCGCTGCCACATTTGCTATCATAAAACATTCCTACTTTGCTGGCTTCTTGGTTTACATGTTGTTCAACTTAGCTCTGGTGTTTTCTTCGGTGTTCATTGTGACACATTTTGCACCTGCAGCAGCAGGCTCTGGCATCCCTGAAATTAAGGGCTACTTGAATGGTATTGATACACCTGGAATTCTTCTGTTCAGAACATTGATTGGGAAGATTTTTGGCAGCATTGGTTCAGTGGGAGGTGGTTTGGCACTTGGAAAGGAAGGGCCTCTTGTTCACACAGGAGCATGTATTGCTTCTCTTATTGGACAAGGTGGGTCTACAAAGTACCATATCAGCTCTAGATGGTTTCGAGATTTCAAGAATGACCGTGATCGTCGTGATCTTGTAACATGTGGATGTGCTG

Fln Alignment:

Contig13215___IMANQIRNGRFELEAVRSAWSRLPHSEDAAEDGGYHIPT-RDSRGGLESLDYEVVENEPYKADRxxxxxxxxxxxxxxxxxxxxxxxxGTGLSAFFINIAVENFAGWKFAATFAIIKHSYFAGFLVYMLFNLALVFSSVFIVTHFAPAAAGSGIPEIKGYLNGIDTPGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLIGQGGSTKYHISSXXXXXXXXXXXXXXLVTCGCA
P92943_______________MLSNHLQNG---IESDNLLWSRVPESDDTSTDDITLLNSHRDGDGGVNSLDYEVIENYAYREEQxxxxxxxxxxxxxxxxxxxxxxxxGTGLAAVFINLSVENFAGWKFALTFAIIQKSYFAGFIVYLLINLVLVFSSAYIITQFAPAAAGSGIPEIKGYLNGIDIPGTLLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWPQLFKSDRDRRDLVTCGCA

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
195		33	66		0.997452
692			11	88	0.923564
693		88		11	0.923564
761			88	11	0.923564
879	25			75	0.996473
881			25	75	0.996473
882			75	25	0.996473
894	16	83			0.994512
895	85	14			0.993533
896			14	85	0.993533
897			14	85	0.993533
898		85		14	0.993533
899		85	14		0.993533
901			14	57	1.0
906			14	85	0.993533
909		14		85	0.993533
911			85	14	0.993533
913		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain