SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13165

Length: 1913 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene13165 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00400, WD40, WD domain, G-beta repeat	-	-	3.0e-07	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	24%
Blast2go	transcriptional corepressor leunig	-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	flower development	GO:0009908	Biological Process	78%
Blast2go	mucilage extrusion from seed coat	GO:0080001	Biological Process	78%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	78%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	78%
Blast2go	nucleus	GO:0005634	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	Single-stranded DNA-binding protein, SSDP	IPR007591	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 429 - 314

Fln protein: MMVPSPSANSTGPGKDASKSQTARKRKQPGSSSGPAISSGTVNNAGPSQSSAPSTPSTQTPGDVLSMAGALQHSASSSKPLLMYGSDGTLASPSNQLVDMDRFGEDGSLDDNVESFLHDDTDLRDPAGRCMDVTKGFSFSEFGCLRASTSKVVCCHFSSDGKLLASAGHEKKAVLWNMETLGVESTLEEHNLLITDVRFSPNSARLATSSFDKTVRVWDADNPSYSLRTFTGHLGTVMSLDFHPNNDLLCSCDGENEMRYWSVNQGICTRTFKGGMSQVRFQTGAGRLLAAAAENVVSIFDVESEHRLHSLQRHTKPVHSVCWDTSGEYLASVSEDSVRVWSFRSGKEGECVHELSCSGNKFHSCVFHPSYPKLLVIGCYQSLELWNMAENRSMTLPAHDGLIAALAVSNATGMVASASHDKCVKLWK*

Protein Length: 430

Fln nts: CAGCAGGATAAGAGTGGAGCTGCACTTACAATTGATAGCAGCCTGTCAAACTCATTTCGTGGAAATGATCAGGTATATAGT_-_ATGATGGTGCCAAGTCCTAGTGCCAACAGTACCGGTCCAGGAAAGGATGCCTCCAAGAGTCAAACTGCAAGAAAAAGGAAGCAACCTGGTTCCTCTTCCGGTCCTGCAATTAGTTCTGGAACAGTGAATAATGCTGGCCCTTCCCAAAGTTCTGCACCCTCAACGCCATCTACTCAGACACCTGGTGATGTGTTGTCTATGGCGGGTGCATTGCAGCACAGTGCTAGCTCATCAAAGCCTCTACTTATGTATGGATCAGATGGGACACTTGCTTCCCCATCGAACCAATTGGTTGATATGGATCGCTTTGGGGAGGATGGATCGTTGGATGACAATGTGGAGTCATTTTTGCATGATGATACAGATCTAAGAGATCCAGCTGGGAGATGCATGGATGTCACTAAAGGGTTCTCCTTTAGTGAGTTTGGTTGTCTTCGAGCTAGTACGAGTAAAGTTGTATGCTGCCACTTCTCTTCTGATGGTAAATTACTAGCCAGTGCTGGACATGAGAAGAAGGCAGTGCTGTGGAATATGGAGACACTGGGAGTTGAGAGTACCCTTGAAGAGCATAACTTATTAATTACTGATGTGCGTTTCAGTCCCAACTCAGCTCGCTTGGCGACATCATCATTCGATAAAACAGTCAGGGTTTGGGATGCAGATAATCCAAGCTATTCATTGAGAACGTTTACTGGTCATTTAGGAACTGTTATGTCTCTTGATTTCCATCCAAACAATGATCTTCTCTGCTCTTGTGATGGAGAAAATGAAATGCGTTATTGGAGTGTTAATCAGGGCATTTGCACAAGAACTTTTAAGGGTGGTATGAGTCAAGTCCGATTTCAAACAGGAGCTGGTAGACTTCTTGCAGCTGCTGCAGAAAATGTTGTATCAATTTTTGATGTTGAGAGTGAGCACCGTTTGCATTCTTTACAGAGGCATACAAAGCCTGTACACTCAGTTTGCTGGGATACAAGTGGAGAATATTTGGCGTCTGTAAGTGAGGATTCTGTTAGGGTATGGTCTTTTCGTTCTGGAAAAGAAGGTGAATGTGTACATGAACTGAGCTGTAGTGGAAATAAATTCCATTCATGTGTCTTTCATCCAAGCTATCCAAAACTTTTGGTAATTGGATGCTATCAGTCATTGGAGCTATGGAATATGGCAGAAAACAGGAGTATGACCCTCCCTGCACACGATGGCCTCATAGCCGCATTGGCAGTTTCCAATGCAACTGGCATGGTTGCTTCTGCGAGTCATGATAAATGTGTAAAATTGTGGAAGTGAATGGCCTGATATAAATCAAAAAACCTTTATTCCCAGGTTGTTGGTTGTTAATGCAATCGTTTTGATCAGAACAATGGTGAGCCTCACATATTTGTTGCTTATTTTGTTTTTAGAGTAATAATTACTCTAATTATCTGTAAATTAATAATCTTCCATAATTTATATGTAAATTTCCTGCCTGCCAACATTTTTTTTCTTCTGAAAATTCATTTCTTAAAGTGCATTGTCTCTTGGAGATTTGCATCTAATCAGTTGTTCCTGTGTTAGTGTTTTACTCTAGAGGTTTTAGTTGTGATTCTTGATCCTCGTAGAGTTGATACTAGATGTAATTGCATACTTTGAGCAAGAAGCCTGCATGTGGCTTTTCCTGATAAGTTGCAACAAGCTTGATGCCTTTTTTTCTTCTTCTGACGTTTCTTGAAATGCTCCCAAATGGATGGTGGGGGGTACATGTGATCTTTTGTATACATAGCAAAAACACTAAGCTGGTAAATATTCATCATAGATATAAACTGTACTTTTGCTTCGGTTGTATTTGTAATAAC

Fln Alignment:

Contig13165___MAGALQHSASSSKPLLMYGSDGTLASPSNQLVDMDRFGEDGSLDDNVESFLHDDTDLRDPAGRCMDVTKGFSFSEFGCLRASTSKVVCCHFSSDGKLLASAGHEKKAVLWNMETLGVESTLEEHNLLITDVRFSPNSARLATSSFDKTVRVWDADNPSYSLRTFTGHLGTVMSLDFHPNNDLLCSCDGENEMRYWSVNQGICTRTF----KGGMSQVRFQTGAGRLLAAAAENVVSIFDVESEHRLHSLQRHTKP---VHSVCWDTSGEYLASVSEDS-VRVWSFRS
A9NPC1_______________MASEAQGSGNSFKPYKLKH----ILTGHKRAVSSVKFSADGKLLGSASA---------DKSVRIWSAGDGSAKRE---LQGHAEGVSDMAWSSDSHYVCSASDDKTLRIWDVHTGDCIKTLKGHTNYVFCVNFNPQSNLIVSGSFDETVRIWDV-RTGKCLKVLPAHSDPVTAVHFNRDGSLIVSSSYDGLCRIWDSATGHCLKTLIDDENPPVSFVNFSPNGKFILAGTLDNTLRLWNFATGKFLKTYTGHVNSKYCISSTFSVTNGKYIVSGSEDNCVYLWDLQA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
222		25		75	0.996473
1771	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain