SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13136

Length: 251 nt

Origin of reads: Biogeco2 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene13136
ATTATAGCCGTTGCAACGGACCGAGAATTGAAAGCTTTCAATTCAATGGTCAGAGAAAGTTTTCTGTTACTGGGCTCATTTAATATTGGAGATTACATACCTTATTTGGACTGGATAGATTTGCAAGGTTTCAACCGCCGAATAAAGAAGCTACATGAGACGCAAAATCATTTGTTAGAGAAAGTAATAGAGGAACATGTTGCCCGGAATGAGTCCAACATCACACATGATCTTGTGGATGTCTTACTTGC

Ace file of the UniGene sp_v2.0_unigene13136 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	flavonoid 3 -hydroxylase	-	-	1.35205e-38	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	1.35205e-38	80%
Blast2go	heme binding	GO:0020037	Molecular Function	1.35205e-38	80%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	1.35205e-38	80%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	1.35205e-38	80%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQT9

Fln msg: Distance to subject end: 23 aas, your sequence is shorter than subject: 83 - 309

Fln protein: IIAVATDRELKAFNSMVRESFLLLGSFNIGDYIPYLDWIDLQGFNRRIKKLHETQNHLLEKVIEEHVARNESNITHDLVDVLL

Protein Length: 84

Fln nts: ATTATAGCCGTTGCAACGGACCGAGAATTGAAAGCTTTCAATTCAATGGTCAGAGAAAGTTTTCTGTTACTGGGCTCATTTAATATTGGAGATTACATACCTTATTTGGACTGGATAGATTTGCAAGGTTTCAACCGCCGAATAAAGAAGCTACATGAGACGCAAAATCATTTGTTAGAGAAAGTAATAGAGGAACATGTTGCCCGGAATGAGTCCAACATCACACATGATCTTGTGGATGTCTTACTTGC

Fln Alignment:

Contig13136___TDRELKAFNSMVRESFLLLGSFNIGDYIPYLDWIDLQGFNRRIKKLHETQNHLLEKVIEEHVARNESNITHDLVDVLL
B8LQT9_______________SDQELRAFNSMIRESFLLLGSFNIGDYIPYLDWMDLQGLNRRMKKLHKTHDYLLEKVIEEHVARNDPKMTHDLVDVLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain