SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13134

Length: 1431 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene13134 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Potassium channel KOR1; AltName: Full=K(+) outward-rectifying channel 1 dbj\|BAD45736.1\| putative shaker-like potassium channel [Oryza sativa Japonica Group] dbj\|BAD45977.1\| putative shaker-like potassium channel [Oryza sativa Japonica Group]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	potassium channel skor-like	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	80%
Blast2go	potassium ion transport	GO:0006813	Biological Process	80%
Blast2go	voltage-gated potassium channel activity	GO:0005249	Molecular Function	80%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	80%
Blast2go	integral to membrane	GO:0016021	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Potassium channel, voltage-dependent, EAG/ELK/ERG	IPR003938	-	-
Sma3	Ion transport	IPR005821	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN39

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 169 - 247

Fln protein: S*PWLSLMHLAASKGHEDIVIFLIKEGADVNCIDKFGNTPLLEAVMSGHNRIATLLVKEGASLNLQDSGSYLCKVVASGGTALLKRLLTYGMDPNSKDYDQRTPLHMAAAEGLHFVAKILLHFGASVLSEDRWGNTPLDEAQKCGSKPLIQTLEIAKQNNISKHVPVF*

Protein Length: 170

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGCATTTGGCCGCATCAAAAGGACATGAAGATATTGTGATATTTCTCATAAAAGAGGGAGCAGATGTGAACTGTATAGATAAATTTGGAAACACCCCGTTGCTAGAGGCAGTCATGTCTGGACACAATCGGATTGCTACACTGCTTGTAAAGGAAGGTGCATCTTTGAATCTACAAGATAGTGGAAGCTATCTGTGTAAAGTAGTAGCAAGCGGGGGAACTGCACTCCTAAAAAGGTTGCTGACCTATGGTATGGACCCAAATTCAAAGGACTATGATCAAAGAACACCACTTCACATGGCGGCTGCTGAGGGTTTGCATTTTGTGGCAAAGATACTACTGCACTTTGGAGCAAGTGTTCTTTCAGAGGACAGGTGGGGAAACACACCACTTGATGAAGCACAAAAGTGCGGGAGCAAGCCTCTGATTCAGACGCTAGAGATTGCAAAACAGAATAATATTAGCAAACACGTCCCAGTCTTCTAA___TGGAACACAGGGAAGCTTGAACTGCAGAAATAGTCTGGACGGTGAGATTCATATCCCATATTCAACATCAATAGGAAAACTTGTAATGGATGATTGTTTAAGTGAAGGGGTGATCAGTTCAAACCAGTCTGTAGAATGTAAGCTGCCGGATGAAGTTACTATTGCGGAAACTGTAAAAGTGTCGCATTCTTCAAGGAAACAGGAAGATAAAAGATGCACCGTTTTCCCTTACCACCCATGGGCTCCAAGAGAAAAGAGAACACACGGAATTGTGATGTGGGTTCCTCAAACTATTGAAAAGTTGTTTGATGCAGCAACAAAACAATTTGGCTTTTGCGGGACTTGCTTGTTAACAGAAGATGCCGGAGAAATCTTGCAAGTTGATCTTATTCAGAATAACCAAAAGTTATATGTGGTTGATGGGACTCGTACTAACAATTAAAAGCTATGTAGTTCTGTAGGATCGTTTCTTATAGAGAAAGGAATGTAACAAAAGTAGCATTAGGGAGAGGAACTTTTAAAAAGGAAATGTAATTGTGCATCTTAGGCAAAGGAGAAAATCCCTTTGGTGGATCTTTTACAAGGTGTATACTCAGATGGTGTTATTTTGCATACTATTGATGCCTATTATTGGCAGTTCGAATTCTCATGGTTATACATATCCATGCTTTTTTCAGAGCCATAGACTTGAACTTTTTACTGAATTCAAAATCTTTTACTGAATTCAAAATCACAGTTCTGGGTGCTTCTAGTTAGAATTGTTTCTCTCCTCCCTCCCAAATAACTGCACACATAAATTGTATATTGTTTTTCATTTAAATTTGAAAATTATGTTTACTGTTCACCAGTTGGTGAGTGGCAAGTTGGTTGTGCCTACGCATACAGACACGGTTCCTCGCCAATATTGTGGACACCTCTTGTC

Fln Alignment:

Contig13134___SLMHLAASKGHEDIVIFLIKEGAD-----VNCIDKFGNTPLLEAVMSGHNRIATLLVKEGASLNLQDSG--SYLCKVVASGGTALLKRLLTYGMDPNSKDYDQRTPLHMAAAEGLHFVAKILLHFGASVLSEDRWGNTPLDEA
A9NN39_______________SVLHVAAAAGHHQVVRILA--GLDPSVSGVNNGDEEGWTPLHSAVSSGHANVVEALLQAGADVSVANNGGRTALHYAASKGRVKIAQDLISNGANIRKKDKFGCTPLHRAASAGHPEICELLIEEGADVDATDKTGQTPLMNA

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1138	80		20		0.995493
1320		20		80	0.995493
1326	80			20	0.995493
1368	75	25			0.996473
1369	75	25			0.996473
1370		25		75	0.996473
1394	33			66	0.997452
1395		33	66		0.997452
1398			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain