SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13133

Length: 750 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene13133

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative ripening regulated protein [Oryza sativa Japonica Group] gb\|ABF94378.1\| MatE family protein, expressed [Oryza sativa Japonica Group]	-	-	2.00386e-43	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	protein transparent testa 12-like	-	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	drug transmembrane transport	GO:0006855	Biological Process	73%
Blast2go	antiporter activity	GO:0015297	Molecular Function	73%
Blast2go	drug transmembrane transporter activity	GO:0015238	Molecular Function	73%
Blast2go	membrane	GO:0016020	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	IPR001930	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Peptidase M1, alanyl aminopeptidase	IPR012779	-	-
Sma3	Peptidase M1, membrane alanine aminopeptidase, N-terminal	IPR014782	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
474		16	83		0.994512
475	83	16			0.994512
477			16	83	0.994512
479	83	16			0.994512
481		16	83		0.994512
483	80	20			0.995493
484	20			80	0.995493
500		80	20		0.995493
509	80			20	0.995493
524			80	20	0.995493
530		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain