SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13033

Length: 1124 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene13033 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Properoxidase n=4 Tax=Picea RepID=Q0JW35_PICAB	-	-	85%
FL-Next	tr=Properoxidase; Picea abies (Norway spruce) (Picea excelsa).	-	-	86%
Blast2go	peroxidase 72 precursor	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	0.0	81%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine metabolism	00360	81%
Blast2go	Methane metabolism	00680	81%
Blast2go	Phenylpropanoid biosynthesis	00940	81%
Blast2go	Biosynthesis of phenylpropanoids	01061	81%
Blast2go	Metabolic pathways	01100	81%
Blast2go	Biosynthesis of secondary metabolites	01110	81%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	81%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	81%
Blast2go	heme binding	GO:0020037	Molecular Function	81%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	81%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	GCN5-like 1	IPR009395	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q0JW36

Fln msg: your sequence is shorter than subject: 241 - 341

Fln protein: KTANPNRNSVRGFEVVDKIKSKLEEACPGVVSCADILAVAARDSVGFSVGPHWEVLLGRRDSKTASKSGANNDIPAPNSTHQTLETKFKLQGLNVVDLVALSGSHTIGLARCTSFKARLYNQTVNGKPDPTLDTSYLKKLRAVCPQTGTDDNRTTPLDPVTPIKFDINYYRNLVEGTGLLRSDEILYSTKGSKTASLVRFYSTNTHAFFKQFAASMIKMGNISPLTGSSGEIRENCRKMN*

Protein Length: 242

Fln nts: AGAAGACAGCAAATCCTAACAGAAATTCTGTAAGAGGCTTTGAAGTAGTGGATAAGATCAAAAGCAAATTGGAGGAAGCATGTCCTGGGGTGGTCTCATGTGCTGACATTCTTGCTGTGGCAGCCCGTGATTCTGTAGGCTTTAGTGTGGGTCCGCATTGGGAGGTTCTACTGGGCAGGAGGGACTCAAAGACTGCAAGCAAGAGCGGTGCAAACAACGACATTCCTGCACCCAACTCAACCCATCAGACTCTGGAAACCAAATTCAAGCTCCAAGGTCTCAATGTGGTTGACCTAGTTGCTCTATCAGGCTCCCATACAATAGGTTTAGCGCGATGCACAAGCTTCAAGGCGAGGCTGTACAATCAGACTGTAAATGGGAAACCTGACCCTACACTCGACACGTCGTACTTAAAGAAGCTGAGGGCCGTGTGCCCTCAAACTGGCACCGACGATAATCGAACCACACCATTGGATCCGGTCACTCCCATAAAATTCGACATCAACTACTACAGGAACCTGGTAGAAGGAACAGGGTTGCTGCGCTCAGATGAGATTCTGTACTCCACCAAAGGAAGTAAAACAGCGAGTTTAGTTAGATTCTACAGCACCAACACGCACGCATTTTTCAAGCAATTCGCTGCATCAATGATAAAGATGGGCAACATCAGTCCTCTCACCGGGTCTAGTGGTGAAATTAGGGAGAACTGTCGTAAAATGAATTGA___CAAACCACCTTGCTGCTGCCTGCGCCTGATGTGTAGTAGTACTCTCAGCCTTCTTTTCATGTAACAAATGGAAACGTCCACCTCGCACTTCATCCGAGCATCGATCAATTCCCATTTTGCTGTAATTGTTGTCGTTGATGTAAAAGCTTATGTAATTCTCACCGTCTATATTTATAAGGGTGGAGATATCTATTAATTATCCCTTGTCTAGAAACTATTTTGTGTTTGATTTCTTGGAAATCACCACGTCCCATATTGGAATGAAAAAAGCCCAACTCTGGAAGTCTTTGTGTTATTCATCTCTCTGGAATCATGAGGTCATTAATGGGAATGTGTAAAGCCCAAACATGAACGCGTATTCCATGATTGTGAGATAATTTGAGCGCGTGGATGCATGTC

Fln Alignment:

Contig13033___KTANPNRNSVRGFEVVDKIKSKLEEACPGVVSCADILAVAARDSVGFSVGPHWEVLLGRRDSKTASKSGANNDIPAPNSTHQTLETKFKLQGLNVVDLVALSGSHTIGLARCTSFKARLYNQTVNGKPDPTLDTSYLKKLRAVCPQTGTDDNRTTPLDPVTPIKFDINYYRNLVEGTGLLRSDEILYSTKGSKTASLVRFYSTNTHAFFKQFAASMIKMGNISPLTGSSGEIRENCRKMN
Q0JW36_______________KTANPNRNSVRGFGVVDQIKCELEKACPGVVSCADILAVAARDSVGFSGGPFWKVLLGRRDSRSASKSGANNDIPGPNSTHQTLETKFKRQGLNVVDLVALSGAHTIGLARCSSFKARLYNQTVNGKPDPTLDTTYLKHLRAVCPQTGTDDNQTTPLDPVTPIRFDINYYDNVVAGKGLLASDEILYSTKGSRTVGLVESYSTSTHAFFKQFAASMIKMGNINPLTGSHGEIRKNCRRMN

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
36		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain