SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13014

Length: 1225 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene13014

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cysteine proteinases-like protein [Arabidopsis thaliana] ref\|NP_001078307.1\| Cysteine proteinases-like protein [Arabidopsis thaliana] sp\|Q8LBZ4.1\|OTU_ARATH RecName: Full=OTU domain-containing protein At3g57810 gb\|AAM63953.1\| unknown [Arabidopsis thaliana]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	cysteine proteinases-like protein	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	cysteine-type peptidase activity	GO:0008234	Molecular Function	0.0	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	87%

Source	InterPros	Term	Type	Identity
Sma3	Ovarian tumour, otubain	IPR003323	-	-
Sma3	Mur ligase, C-terminal	IPR004101	-	-
Sma3	Mur ligase, central	IPR013221	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMJ1

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 327 - 411

Fln protein: RRDLGCHSFFISYKNLGIISILTS*SGRHGDKSVGICVHKHSNVLVVRIW*QKCRYLCSLVYS*ACMNYS*IPSIQPVCNFFILGECSRYIYERNRIPAGL*WPFYGNCLFSFAEGWI*CSMLTFVTQRGYII*YM*LRARLRSSSGWVCC**KHTCLLVKKAVHVCTVV*VGS*RVMANGSLGIPGDGRCLFRAVAYGACLRKEEPPPNESTQRELADELRSKVADEFLKRRKETEWFLEGDFDTYVKQIRKPYVWGGEPELLMASHVLQMPITVYMNGRNPDDLTSIAEYGQEYGKDDPIRVLYHGYGHYDALQISKKGTKSKL*

Protein Length: 328

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTTTATCAGTTATAAAAATTTGGGCATCATAAGCATTCTAACGTCTTAGTCGGGACGACATGGTGATAAAAGTGTAGGTATCTGTGTTCATAAGCATTCTAACGTCCTAGTCGTGAGGATATGGTGACAAAAGTGTAGGTATCTATGTTCGCTCGTATACAGCTGAGCGTGTATGAATTATTCTTGAATACCATCAATCCAGCCGGTTTGTAACTTTTTCATATTGGGGGAATGTAGCAGGTATATATACGAAAGGAATAGGATCCCTGCGGGCCTCTGATGGCCTTTTTACGGAAATTGTCTTTTCTCTTTTGCAGAGGGATGGATTTGATGCTCCATGCTCACGTTTGTCACGCAGAGGGGGTATATAATATAATATATGTAGCTCAGAGCTAGGCTTAGAAGCAGTTCTGGGTGGGTTTGCTGCTGATGAAAACACACGTGTTTGCTGGTGAAAAAAGCGGTCCATGTTTGCACGGTTGTGTAGGTGGGCAGCTAGCGAGTCATGGCAAATGGGTCACTGGGCATACCAGGTGATGGTAGATGTTTGTTTCGGGCTGTTGCTTATGGTGCCTGCTTGAGAAAGGAAGAACCCCCTCCAAATGAGAGCACCCAGAGAGAACTTGCAGATGAATTGCGGAGCAAAGTAGCAGATGAATTTCTAAAGAGACGGAAAGAGACGGAATGGTTTTTGGAGGGAGATTTTGATACTTATGTCAAGCAGATTAGGAAGCCTTATGTTTGGGGTGGAGAACCAGAGCTACTGATGGCTTCACATGTGCTGCAAATGCCAATAACAGTATATATGAACGGGAGAAACCCTGATGATCTCACATCCATCGCTGAGTATGGTCAGGAGTATGGGAAAGATGACCCTATTCGAGTTTTGTATCATGGATATGGACACTATGATGCTTTACAAATTTCAAAAAAGGGGACTAAGTCAAAGTTGTAA___AGTTGATAGGTCTCTCTCATAATTTCCAAGTGAATGTTATGCTTGTCATTAAGGTTGTGCTATTAATTTTAAAATTAATTGTATTGGAATTCATGGCACTTGGGTCTGAGTTGACTTTAAGTTGGAAGGACGTGGATGATATATCAGTTCTGAATGTGGAGGCTGTTCTATGATTTCAATTGGTCCATGTCATCATAAGTTGAATATTGAAATTATAATTAAATAATATGAATTAACAAAGTAC

Fln Alignment:

Contig13014___IPGDGRCLFRAVAYGACLRKEEPPPNESTQRELADELRSKVADEFLKRRKETEWFLEGDFDTYVKQIRKPYVWGGEPELLMASHVLQMPITVYMNGRNPDDLTSIAEYGQEYGKDDPIRVLYHGYGHYDALQI
B8LMJ1_______________IPGDGRCLFRAVAHGASLRSGKPAPNESLQRELADELRTRVADELLKRREETEWFIEGDFDKYVEQIKRPHVWGGEPELLMASHVLQMPITVYMRERETDGLIAIAEYGQDYGKGNPISVLYHGFGHYDALQI

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
951	66	33			0.997452
1074			50	50	1.0
1114		75		25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
392	406	ATATA ATATA ATATA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain