SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene13011

Length: 300 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene13011
GAATGTTCCAGCTGATCAATAGGAATATGAATATGATTGTGGATACACTGATAGAAAAACATTCAGAAGAATGAAAGAATGCTCGTTTTATGCAGAAAATCATATCCAGTCTATTATTGGAGCAAGGTCTTTTGCGGAGGTTCTTTTTGGAGCTTCTCAAACTACTTTGCCAAATGAATCATTTGTAAGGGGAGTATCTTTATACAAGATGATCCGACTGATATCTTTAACCATGTGTGGACGTGCCTACCTTAATTTTATGGGCAATGAATTTGGCCACCTTGCGAAAGTTGAGTTTCC

Ace file of the UniGene sp_v2.0_unigene13011

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Starch-branching enzyme-like protein n=5 Tax=Arabidopsis RepID=Q9LTP8_ARATH	-	-	8.0e-17	65%
FL-Next	Isoform 2 of 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SBE1	-	-	0.0	40%
Blast2go	alpha amylase family protein	-	-	5.59651e-20	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-amylase.	EC:3.2.1.1	-	5.59651e-20	70%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		5.59651e-20	70%
Blast2go	Metabolic pathways	01100		5.59651e-20	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	5.59651e-20	70%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	5.59651e-20	70%
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	5.59651e-20	70%
Blast2go	alpha-amylase activity	GO:0004556	Molecular Function	5.59651e-20	70%
Blast2go	chloroplast	GO:0009507	Cellular Component	5.59651e-20	70%

Source	InterPros	Term	Type	Identity
Sma3	Extradiol ring-cleavage dioxygenase, class I /II	IPR000486	-	-
Sma3	Glycoside hydrolase, family 13, N-terminal	IPR004193	-	-
Sma3	Glycosyl hydrolase, family 13, catalytic domain	IPR006047	-	-
Sma3	Alpha-amylase, C-terminal all beta	IPR006048	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q01401-2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 216 aas, your sequence is shorter than subject: 99 - 755

Fln protein: NVPADQ*EYEYDCGYTDRKTFRRMKECSFYAENHIQSIIGARSFAEVLFGASQTTLPNESFVRGVSLYKMIRLISLTMCGRAYLNFMGNEFGHLAKVEF

Protein Length: 100

Fln nts: GAATGTTCCAGCTGATCAATAGGAATATGAATATGATTGTGGATACACTGATAGAAAAACATTCAGAAGAATGAAAGAATGCTCGTTTTATGCAGAAAATCATATCCAGTCTATTATTGGAGCAAGGTCTTTTGCGGAGGTTCTTTTTGGAGCTTCTCAAACTACTTTGCCAAATGAATCATTTGTAAGGGGAGTATCTTTATACAAGATGATCCGACTGATATCTTTAACCATGTGTGGACGTGCCTACCTTAATTTTATGGGCAATGAATTTGGCCACCTTGCGAAAGTTGAGTTTCC

Fln Alignment:

Contig13011___RRMKECSFYAENHIQSIIGARSFA------EVLFGASQTTLPNESFVRGVSLYKMIRLISLTMCGRAYLNFMGNEFGHLAKVEF
Q01401-2_____________RYTEKCIAYAESHDQSIVGDKTIAFLLMDKEMYTGMSDLQPASPTINRGIALQKMIHFITMALGGDGYLNFMGNEFGHPEWIDF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain