SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12997

Length: 450 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene12997
GAAGAAACTTGCAAAAGGAGTCTATGTGAGTTTGGAGCAATTTGAGGATGATGTTTTCCTGATCTGTAGCAATGCAATGAATTACAATGCAGTAGGTACCATCTACTACAGAAAGGCTCGTGCTATACAGGAACTGGCAAAAAAGTCTTTTCAGATATTGCGGTGTGATCCTGAAAATTTTGAATTGGAGCATGAATTCCCCTCAAATTCAAAATCTGGTTTTGCCACCAAGAACTTTACAAATAAGGCCACATTGAGAAAATCACATTTTGAGTCTACTGGTTCAGACTTTACCTTCAGGTGCAACTCTTGCTACAGGTGGAAATGATGCTAACTTGTCTAACACCTCTCTGCATGATGCTCCGAAGGTAAGGAACACAGGGTCTGTATATTCAAATGGGACTGTCTATCAAGGGCATAACAATGATGATCAAAATAGTTCAGCAGTTT

Ace file of the UniGene sp_v2.0_unigene12997

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Bromodomain-containing protein n=1 Tax=Ricinus communis RepID=B9S4L0_RICCO	-	-	2.0e-17	52%
FL-Next	tr=Bromodomain-containing protein; Ricinus communis (Castor bean).	-	-	0.0	52%
Blast2go	bromodomain-containing protein	-	-	2.50657e-19	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone acetyltransferase.	EC:2.3.1.48	-	2.50657e-19	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	histone acetylation	GO:0016573	Biological Process	2.50657e-19	71%
Blast2go	histone acetyltransferase activity	GO:0004402	Molecular Function	2.50657e-19	71%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	2.50657e-19	71%
Blast2go	plastid	GO:0009536	Cellular Component	2.50657e-19	71%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9S4L0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 383 aas, your sequence is shorter than subject: 109 - 767

Fln protein: KKLAKGVYVSLEQFEDDVFLICSNAMNYNAVGTIYYRKARAIQELAKKSFQILRCDPENFELEHEFPSNSKSGFATKNFTNKATLRKSHFESTGSDFTFRCNSCYRWK*

Protein Length: 110

Fln nts: GAAGAAACTTGCAAAAGGAGTCTATGTGAGTTTGGAGCAATTTGAGGATGATGTTTTCCTGATCTGTAGCAATGCAATGAATTACAATGCAGTAGGTACCATCTACTACAGAAAGGCTCGTGCTATACAGGAACTGGCAAAAAAGTCTTTTCAGATATTGCGGTGTGATCCTGAAAATTTTGAATTGGAGCATGAATTCCCCTCAAATTCAAAATCTGGTTTTGCCACCAAGAACTTTACAAATAAGGCCACATTGAGAAAATCACATTTTGAGTCTACTGGTTCAGACTTTACCTTCAGGTGCAACTCTTGCTACAGGTGGAAATGATGCTAACTTGTCTAACACCTCTCTGCATGATGCTCCGAAGGTAAGGAACACAGGGTCTGTATATTCAAATGGGACTGTCTATCAAGGGCATAACAATGATGATCAAAATAGTTCAGCAGTTT

Fln Alignment:

Contig12997___KKLAKGVYVSLEQFEDDVFLICSNAMNYNAVGTIYYRKARAIQELAKKSFQILRCDPENFELEHEFPSNSKSGFATKNFTNKATLRKSHFESTGSDFT
B9S4L0_______________KKLAGGVYANLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIQELAKKNFENLRQDSDDNEPEPEPTVVRRGRPPTKNL--KKPVGRPSLDRAGSEYS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain