SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12982

Length: 1123 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene12982 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	bud site selection protein 31 [Arabidopsis thaliana] ref\|XP_002869907.1\| G10 family protein [Arabidopsis lyrata subsp. lyrata] gb\|AAK95313.1\|AF410327_1 AT4g21110/F7J7_50 [Arabidopsis thaliana] emb\|CAA17530.1\| G10-like protein [Arabidopsis thaliana] emb\|CA	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	BUD31/G10-related, conserved site	IPR018230	-	0.0	-
Sma3	G10 protein	IPR001748	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
137	83			16	0.994512
571	7			71	1.0
883	3		6	89	0.998304
885		10		89	1.0
888		7		85	0.996721
890	7			92	0.999532
892			7	92	0.999532
894	92	7			0.999532
895	7			92	0.999532
899	92	7			0.999532
900		92	7		0.999532
908	7			92	0.999664
1029		11	76	11	0.999894
1044	18	72	9		0.999994
1046		81		18	0.999994
1047		72	9		0.999994
1049	10			90	0.90298
1053	33		66		0.997452
1055		66	33		0.997452
1056			33	66	0.997452
1058		33	66		0.997452
1060		33		66	0.997452
1061	66		33		0.997452
1063		33		66	0.997452
1064			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain