SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12871

Length: 493 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene12871
AGAAAAAGGAACCAATCAACACATACCCATTGTTGCACTGACTGCACATGCTATGTCATCAGATGAAGCTAAATGCTTAGAAGTGGGAATGGATGCATACCTCACAAAGCCAATTGATTACAAGTTGATGGCCTCCACTATTCTGGCTCTCGTCAAGAAAAAAAGTTGAACGTCTTCATCCCTTTTCACTGACATGTATACACACAGCCAACCCGGTCTAACAGAGAGATCAAGTAACACACGTTACCTTTCTTACTGAAAAAAAACACACGTTACCTTTCCTTTGTTATTATCTGTTCACCCTTGTTGGGTTCCAAGTATCATTTATATCGCTCCTATTGTAATAAATCCTTTTGTTGTAACATTTTTTCAGAAATTAAAATAATAAGGTAGGGTTATGGCCTTATTTTGCCGATGTATCTTTTCATCTTTCAGTTCAACTTTGGAGTTTGATCAATATCAAATGTCACAGATTGTAATTAGGAAATACTGA

Ace file of the UniGene sp_v2.0_unigene12871

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histidine kinase osmosensor protein n=1 Tax=Populus trichocarpa RepID=B9GYZ6_POPTR	-	-	2.0e-17	90%
FL-Next	sp=Histidine kinase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	88%
Blast2go	histidine kinase osmosensor protein	-	-	1.71069e-19	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	1.71069e-19	90%
Blast2go	seed maturation	GO:0010431	Biological Process	1.71069e-19	90%
Blast2go	response to water deprivation	GO:0009414	Biological Process	1.71069e-19	90%
Blast2go	peptidyl-histidine phosphorylation	GO:0018106	Biological Process	1.71069e-19	90%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	1.71069e-19	90%
Blast2go	response to osmotic stress	GO:0006970	Biological Process	1.71069e-19	90%
Blast2go	histidine phosphotransfer kinase activity	GO:0009927	Molecular Function	1.71069e-19	90%
Blast2go	two-component response regulator activity	GO:0000156	Molecular Function	1.71069e-19	90%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	1.71069e-19	90%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	1.71069e-19	90%
Blast2go	osmosensor activity	GO:0005034	Molecular Function	1.71069e-19	90%
Blast2go	ATP binding	GO:0005524	Molecular Function	1.71069e-19	90%
Blast2go	protein binding	GO:0005515	Molecular Function	1.71069e-19	90%
Blast2go	two-component sensor activity	GO:0000155	Molecular Function	1.71069e-19	90%
Blast2go	membrane	GO:0016020	Cellular Component	1.71069e-19	90%

Source	InterPros	Term	Type	Identity
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain	IPR003661	-	-
Sma3	Signal transduction histidine kinase-related protein, C-terminal	IPR004358	-	-
Sma3	Signal transduction histidine kinase, core	IPR005467	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9SXL4

Fln msg: your sequence is shorter than subject: 56 - 1207

Fln protein: EKGTNQHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMASTILALVKKKS*

Protein Length: 57

Fln nts: AGAAAAAGGAACCAATCAACACATACCCATTGTTGCACTGACTGCACATGCTATGTCATCAGATGAAGCTAAATGCTTAGAAGTGGGAATGGATGCATACCTCACAAAGCCAATTGATTACAAGTTGATGGCCTCCACTATTCTGGCTCTCGTCAAGAAAAAAAGTTGA___ACGTCTTCATCCCTTTTCACTGACATGTATACACACAGCCAACCCGGTCTAACAGAGAGATCAAGTAACACACGTTACCTTTCTTACTGAAAAAAAACACACGTTACCTTTCCTTTGTTATTATCTGTTCACCCTTGTTGGGTTCCAAGTATCATTTATATCGCTCCTATTGTAATAAATCCTTTTGTTGTAACATTTTTTCAGAAATTAAAATAATAAGGTAGGGTTATGGCCTTATTTTGCCGATGTATCTTTTCATCTTTCAGTTCAACTTTGGAGTTTGATCAATATCAAATGTCACAGATTGTAATTAGGAAATACTGA

Fln Alignment:

Contig12871___EKGTNQHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMASTILAL
Q9SXL4_______________EIGTELHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDRKLMVSTILSL

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
46	66		33		0.997452
163	75	25			0.996473
172	75	25			0.996473
174			75	25	0.996473
176		75	25		0.996473
177			25	75	0.996473
178		25		75	0.996473
179		75		25	0.996473
180	75		25		0.996473
183	25	75			0.996473
187	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain