SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12844

Length: 555 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene12844
AGAGAGTTTGACAAAGAAGAAGTGGTAAGTGTCTATGAGCTAATTGAGCACCCAGATTACAATTATTGTATTGGGGACATTGTTATTCGACTGCCCTCTGTTGCAGAGCTGCCAGAAGTGTCTGGTGTTGTTGAATCATCAGTTGATGATAAGGTGTGTCAAGACATCTCACCACTTGAGAATTGTATGAAAACAGAAAATGATTCAAACATTGAGAAAGATTGTGAAATGGAGCCAAAACCTGAGTATTGTATTAGAACAGAACTATCTTCAGAACAGAGATCTTTGAGAAAAAGACAAAAAGCTAAGGCTGGTCTGGCCTTTGAGGATCAGTCTGGTGATGATAAAGAAATTGAACTGAAGCCAAAAATGTGTAAATGACACCAAAAGTACAGAGCAAATTTTCCAGCAAGGGTCTTCAAGAAGGTGTAAGGCTAAAGTAGGTATGAATACCGAAGAATCAGATTTATCCTCGATTGGGAATATTATAGGTCTCAAAGACGGGGATATTGAAGTGATGTGGGCAGATGGAATGATTTCAAAGGTTGGACCACA

Ace file of the UniGene sp_v2.0_unigene12844

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable ubiquitin-conjugating enzyme E2 23 n=2 Tax=Arabidopsis RepID=UBC23_ARATH	-	-	4.0e-07	68%
FL-Next	sp=Probable ubiquitin-conjugating enzyme E2 23; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	68%
Blast2go	ubiquitin-conjugating enzyme e2 23	-	-	6.82504e-08	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	6.82504e-08	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of protein metabolic process	GO:0051246	Biological Process	6.82504e-08	83%
Blast2go	post-translational protein modification	GO:0043687	Biological Process	6.82504e-08	83%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	6.82504e-08	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZVX1

Fln msg: Separated hits, possible frame ERROR between 105 and 410, Distance to subject end: 452 aas, your sequence is shorter than subject: 185 - 1102

Fln protein: REFDKEEVVSVYELIEHPDYNYCIGDIVIRLPSVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQGSSRRCKAKVGMNTEESDLSSIGNIIGLKDGDIEVMWADGMISKVGP

Protein Length: 186

Fln nts: AGAGAGTTTGACAAAGAAGAAGTGGTAAGTGTCTATGAGCTAATTGAGCACCCAGATTACAATTATTGTATTGGGGACATTGTTATTCGACTGCCCTCTGTTGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCAAGGGTCTTCAAGAAGGTGTAAGGCTAAAGTAGGTATGAATACCGAAGAATCAGATTTATCCTCGATTGGGAATATTATAGGTCTCAAAGACGGGGATATTGAAGTGATGTGGGCAGATGGAATGATTTCAAAGGTTGGACCACA

Fln Alignment:

Contig12844___REFDKEEVVSVYELIEHPDYNYCIGDIVIRLPSVAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQGSSRRCKAKVGMNTEESD-------LSSIGNIIGLKDGDIEVMWADGMISKVGP
Q9ZVX1_______________REFEKEEIVSVYELEGHPDYDYCYGDVVVRLSPIAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQDSESHQEAKILVDKEENEPSTDLSKLSWVGNITGLKDGDIEVTWADGTISTVGP

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
154	83	16			0.994512
463	25		75		0.996473
464	75			25	0.996473
465	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain