SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12671

Length: 1747 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene12671 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine protein kinase, putative n=1 Tax=Ricinus communis RepID=B9SWQ3_RICCO	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	protein kinase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	86%
Blast2go	ATP binding	GO:0005524	Molecular Function	86%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	86%
Blast2go	cytoplasm	GO:0005737	Cellular Component	86%
Blast2go	nucleolus	GO:0005730	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3	PAS-associated, C-terminal	IPR000700	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	AGC-kinase, C-terminal	IPR000961	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Phytochrome	IPR001294	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	Zinc finger, RanBP2-type	IPR001876	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	GAF domain	IPR003018	-	-
Sma3	Domain of unknown function DUF591	IPR007649	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Phytochrome, central region	IPR013515	-	-
Sma3	Phytochrome chromophore binding site	IPR013516	-	-
Sma3	PAS fold-2	IPR013654	-	-
Sma3	PAS fold-3	IPR013655	-	-
Sma3	PAS fold	IPR013767	-	-
Sma3	Phytochrome chromophore attachment domain	IPR016132	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKY3

Fln msg: your sequence is shorter than subject: 430 - 545

Fln protein: SSVNKPHKSNDTRWEAIRAVRMKDGILGLSHFRLLKRLGCGDIGSVYLSELSGMRCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEYCPGGDLHTLRQRQPGKHFSEQAVRFYVAEVLLALEYLHMLGVVYRDLKPENVLVREDGHIMLSDFDLSLRCVVSPTLVKSTSVDVDMSKKLPAYCVQPACIEPSCVQPVCVQPSCVQPTCFVPRFFPNKSKKERKPKNEVGNQVTPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKPIDIDLLGKRVPVASSSEKKIADVDSKSGGNYLDFDFF*

Protein Length: 431

Fln nts: GTAGCAGTGTGAACAAGCCTCACAAGTCAAATGATACAAGATGGGAAGCCATAAGAGCAGTTAGGATGAAAGACGGAATTTTGGGGTTGAGCCATTTTAGGTTGCTCAAGAGGCTAGGGTGTGGTGATATAGGCAGTGTTTATCTTTCTGAGCTGAGTGGTATGAGATGCTATTTTGCAATGAAGGTGATGGATAAAGGTTCTTTGGCAAGTCGAAAAAAACTTCTGAGAGCTCAAACTGAAAGGGAAATTCTACAATCTCTGGATCATCCTTTTCTTCCAACATTATACACCCACTTTGAGACAGACAAGTTCTCATGTCTGGTTATGGAGTATTGTCCAGGAGGAGATCTACACACACTTCGACAACGACAACCAGGAAAGCACTTTTCTGAACAAGCAGTTCGGTTTTATGTAGCAGAGGTTCTTCTAGCTTTGGAATACCTACATATGCTGGGAGTCGTGTACAGAGACCTCAAACCTGAAAATGTTCTTGTAAGGGAGGATGGGCATATCATGCTTTCAGATTTTGATCTCTCTCTTAGATGTGTTGTTAGTCCAACTTTGGTTAAATCAACATCTGTTGATGTTGACATGTCAAAGAAACTTCCAGCATACTGTGTCCAACCTGCTTGTATTGAACCCTCATGTGTCCAACCAGTATGTGTTCAGCCTTCTTGTGTACAACCAACTTGTTTTGTACCTCGTTTCTTCCCGAACAAATCAAAGAAAGAACGGAAACCAAAAAATGAAGTTGGTAATCAAGTGACCCCTCTTCCAGAGCTTATCGCAGAGCCTACTAGTGCCCGTTCCATGTCATTTGTGGGAACCCATGAGTATCTGGCTCCTGAGATTATTAAAGGAGAGGGTCATGGAAGTGCAGTGGATTGGTGGACATTTGGAATATTTCTATATGAACTTCTGTTTGGAAAGACACCTTTTAAGGGTTCAGGCAATCGTGCTACACTGTTCAATGTAGTAGGACAACCTCTCAGATTTCCAGAATCACCCACAGTAAGTTTTGCAGCAAGGGATTTGATCAGGGGTTTACTTGTGAAAGAGCCACAACATCGATTAGCATACAAGCGCGGTGCCACTGAAATCAAACAACACCCTTTCTTTGAGGGTGTGAACTGGGCCCTTATACGGTGTGCTACTCCTCCTGAAATTCCAAAGCCTATTGACATTGATTTGTTGGGAAAGAGAGTACCAGTGGCTTCATCAAGTGAAAAGAAAATTGCTGATGTTGATTCAAAATCTGGTGGTAATTATTTGGATTTTGATTTCTTTTGA___GTATGATGAAAATATCCAATGCTTATGTCATCGAATATGTTGAAACAGTCAACTTTTTAATCCATGTAAACGCTTCCTTTTCTGAGGAATTGCATAATTCTTCGCTGGGAAGGTCTGCAGAATGCAATTGACCTGTATTTTGAGAAGCAGGCACTTCAAGTTGATTCTTTTCATTCAGACGATGAAATTGGCATGTTTGAAATTGTATTATAGTGTTTTTATGGGAATAAGGATTGCTTCAAGTCATACTTTTCAGTAGCAGCAGGTTCTTTCTTTCAGATTGACATGGACTGAGAAATGTTGTTAAAACCTATTCATTTTCTTGAGATTATATGCTAGGTCAATTCTTGCATTAGGTAGAATCAATGATTTGAAATATACACTAGAAGTTGTAACAAGGAAATGTGTCTAGGAGCTTATGTTACACCAGTAACTTAGTTATTTGATGATCTTGG

Fln Alignment:

Contig12671___SSVNKPHKSNDTRWEAIRAVRMKDGILGLSHFRLLKRLGCGDIGSVYLSELSGMRCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEYCPGGDLHTLRQRQPGKHFSEQAVRFYVAEVLLALEYLHMLGVVYRDLKPENVLVREDGHIMLSDFDLSLRCVVSPTLVKSTSVDVDMSKKLPAYCVQPACIEXXXXXXXXXXXXXXXPTCFVPRFFPNKSKKERKPKNEVGNQVTPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKPIDIDLLGKRV-PVASSSEKKIADVDSKSGGNYLDFDFF
B8LKY3_______________SSLNKPHKGNDPRWDAIQAVKVRDGFLGLSHFRLLKRVGSGDIGSVYLAELRGTNCFFAMKVMDKGSLENRNKSLRAQTEREILSCLDHPFLPTLYSHFETDKFSCLVMEFCSGGDLHSFRQQQPWKRFSESASRFYAAEILLALEYLHMMGIVYRDLKPENVLVRGDGHIMLLDFDLSLRCVVSPTLVKSASPGLDPSRRVPVYCVQPSCIE-----PSCVTPVCLQPSCFRPRFLPQRSKKIRKPKNEMANQSNLLPELIAEPTSARSMSFVGTHEYLAPEIIKGQGHGSAVDWWTFGIFLYELLYGTTPFKGAGNRETLEKIAGQALRFPDSPTVSFAARDLIRGLLMKDPQHRLAFKRGATEIKQHPFFDGANWALIRSTTPPQIPKPIDLSFLTNKVTPPSARGEKKKVDSDA----NSFDFDFF

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
357	66			33	0.997452
385	25		75		0.996473
492			16	83	0.994512
494			16	83	0.994512
495	16			83	0.994512
496		16	83		0.994512
498	83		16		0.994512
499		16		83	0.994512
503		83	16		0.994512
504	83		16		0.994512
508		16	83		0.994512
509		83	16		0.994512
511	83	16			0.994512
512			16	83	0.994512
592		25	75		0.996473
600	25	75			0.996473
601		75	25		0.996473
605		25		75	0.996473
606	75		25		0.996473
608		25	75		0.996473
1606		20	80		0.995493
1609	60			20	0.99255
1618	25	75			0.996473
1619		75	25		0.996473
1622			25	75	0.996473
1631	25	75			0.996473
1632	75		25		0.996473
1633		75	25		0.996473
1634		75		25	0.996473
1636	25			75	0.996473
1637	75	25			0.996473
1639	25	75			0.996473
1641			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain