SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12659

Length: 1197 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene12659 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	64%
Blast2go	tetratricopeptide repeat -containing protein	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	binding	GO:0005488	Molecular Function	72%
Blast2go	plasma membrane	GO:0005886	Cellular Component	72%
Blast2go	chloroplast	GO:0009507	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9RLF4

Fln msg: Distance to subject end: 731 aas, your sequence is shorter than subject: 398 - 1449

Fln protein: REVLERRASGHPFENVPSLLPLNPWLGAHPPPAHRRDVSRAEDALALPYGTDSVGMQRDWNEELQSCREFPRKSLQDRILRDRALFKVSCDFVDAAVKGAKGVINRCIPPINPTDPERFHMYVHNNIFFSFAVDADFAQMQQLYEQGTKVDRARPSAKVEGAACNCLLDKAESPKSEVLSDQKDLDGQIDVAKEPTSEHSGLEILEKEKEVCSVVGGNSIENDASQITDNEQATYASANNDLKGTKAYNTADIPGLYTLAMAIVDYRGHRVVAQSIIPGILQGDKSDSLLYGSVDNGKKICWNDKFHAKVLEAAKLLHVKEHEVLDGSSNRVKMAAPVECKGIVGSDDRHYLLDLMRTTARDANYVGPGSRYCVLRPELVAAFCQVEGEERLKKDIQQ

Protein Length: 399

Fln nts: TTCGTGAAGTTCTGGAAAGGAGGGCCTCTGGGCATCCTTTTGAAAATGTACCAAGTTTGTTGCCACTGAATCCATGGCTTGGTGCTCATCCCCCCCCAGCTCATAGGAGGGATGTTTCTAGAGCCGAGGACGCTTTGGCTCTACCTTATGGGACTGACTCAGTAGGCATGCAGCGGGACTGGAATGAGGAGTTACAGTCATGTAGGGAATTTCCTCGTAAATCTCTTCAAGACAGGATTCTGCGTGATAGGGCTCTTTTTAAGGTAAGCTGCGATTTTGTTGACGCAGCAGTAAAAGGTGCCAAGGGTGTCATTAATAGATGCATACCACCAATCAACCCTACAGACCCTGAACGATTTCATATGTATGTTCATAACAACATATTCTTTAGCTTTGCTGTTGATGCCGACTTCGCACAAATGCAGCAGTTGTATGAGCAGGGTACAAAGGTGGACCGTGCTAGGCCATCGGCGAAGGTTGAAGGTGCTGCATGCAATTGTTTATTGGATAAAGCTGAAAGTCCAAAATCTGAAGTCTTATCAGATCAAAAAGATTTAGACGGCCAAATAGATGTGGCTAAGGAGCCTACAAGTGAACATTCAGGACTGGAAATCCTAGAGAAGGAAAAAGAAGTTTGTTCTGTGGTGGGTGGAAATTCTATAGAGAATGATGCTTCACAAATAACTGACAATGAGCAGGCAACCTATGCATCAGCAAATAATGACTTAAAGGGAACAAAGGCATACAATACTGCAGATATTCCAGGACTTTACACTTTAGCTATGGCAATTGTTGATTACAGAGGCCACAGGGTTGTTGCACAGAGCATAATTCCGGGGATCCTGCAAGGTGATAAGTCTGACTCTCTTCTCTATGGTTCTGTTGACAACGGCAAAAAGATATGCTGGAATGATAAATTCCATGCAAAGGTCTTGGAAGCTGCAAAGTTACTTCATGTAAAGGAGCATGAGGTGCTTGATGGATCTTCCAATAGAGTGAAAATGGCTGCTCCTGTGGAATGCAAGGGTATTGTTGGTAGTGATGATAGACATTATCTGCTAGATTTAATGAGAACGACTGCAAGGGATGCAAACTATGTAGGTCCAGGGTCACGTTACTGTGTCTTAAGGCCTGAACTTGTTGCTGCCTTTTGCCAGGTTGAAGGTGAAGAAAGATTAAAGAAGGACATTCAGCAAG

Fln Alignment:

Contig12659___VLERRASGHPFENVPSLLPLNPWLGAHPPPAHRRDVSRAEDALALPYGTDSVGMQRDWNEELQSCREFPRKSLQDRILRDRALFKVSCDFVDAAVKGAKGVINRCIPPINPTDPERFHMYVHNNIFFSFAVDADFAQMQQLYEQGTKVDRARPSAKVEGAACNCLLDKAESPKSEVLSDQKDLDGQIDVAKEPTSEHSGLEILEKEKEVCSVVGGNSIENDASQITDNEQATYASANNDLKGTKAYNTADIPGLYTLAMAIVDYRGHRVVAQSIIPGILQGDKSDSLLYGSVDNGKKICWNDKFHAKVLEAAKLLHVKEHEVLDGSSNRVKMAAPVECKGIVGSDDRHYLLDLMRTTARDANYVGPGSRYCVLRPELVAAFCQV
A9RLF4_______________ILDKKSSGHPFENVPVLLPPNAWLGPHPIPPHKRDIARAEDALMVPYGTEVVGMQRDWNEELQSCREFSRDNLQDRIMRDRALYKVNCDFVEAATKGAKAVINRCIPPINPTDPDRFHMYVHNNIFFSFAVDGDFTLMQQVRDQNSQTG--------ESSTEESTISNGDAKSDNAESNESDASLSLDA------------------------------NSGSAVVESEQATYASANNDLKGTKAYNNADVSGLYTLAMAIIDYRGHRVVAQSIIPGILQGDKTESLLYGSVDNGKKIAWNEKFHAKALEAGKLLHIKEHTVLDGAGKEVTLCAPVECKGIVGSDDRHYLLDLMRTTPRDINYTGPGCRLCVLRPELVAMFCQV

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
944	14		85		0.993533
945	85		14		0.993533
990	66		11		0.999999
1070		12		87	0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain