SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene12656

Length: 625 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene12656

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Regulator of telomere elongation helicase 1 n=2 Tax=Andropogoneae RepID=B6UDG6_MAIZE	-	-	65%
FL-Next	tr=Regulator of telomere elongation helicase 1; Zea mays (Maize).	-	-	67%
Blast2go	regulator of telomere elongation helicase 1	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	nucleobase-containing compound metabolic process	GO:0006139	Biological Process	78%
Blast2go	ATP-dependent DNA helicase activity	GO:0004003	Molecular Function	78%
Blast2go	DNA binding	GO:0003677	Molecular Function	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	78%
Blast2go	nucleus	GO:0005634	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Casein, alpha/beta	IPR001588	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Helicase-like, DEXD box c2 type	IPR006554	-	-
Sma3	ATP-dependent helicase, C-terminal	IPR006555	-	-
Sma3	Helicase/UvrB domain	IPR006935	-	-
Sma3	DEAD2	IPR010614	-	-
Sma3	DNA helicase (DNA repair), Rad3 type	IPR013020	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type	IPR014013	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
360			25	75	0.996473
365			75	25	0.996473
367	25	75			0.996473
369	75	25			0.996473
375		25		75	0.996473
376		75		25	0.996473
382		25		75	0.996473
385	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain